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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTTCACATTTGACAAAGTATTTGAGCAGTCGGCATCACAAGAAGATGTGTTCATTGAGATTTCCCAACTCATCCAAAGCGCCCTTGATGGCTACAAGgtaacatttacttgttgctgtgttttgagaagtgcaagagcacaacctcgctataggagagggaaaaaagtttgtccataaaagttagtatttataattcgtgctaactaatgtgaaaacaactcag

Basic information

species Oryza sativa
transcript LOC_Os07g01490.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g01490.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G436981_T01 (Zea mays), 5'ss of exon 10
TTCTTTCACATTTGACAAAGTATTTGAGCAGTCGGCATCACAAGAAGATGTGTTCATTGAGATTTCCCAACTCATCCAAAGCGCCCTTGATGGCTACAAGgtaacatttacttgttgctgtgttttgagaagtgcaagagcacaacctcgctataggagagggaaaaaagtttgtccataaaagttagtatttataattcgtgctaactaatgtgaaaacaactcag
||| || || ||||| ||||||||||| || ||||| ||||||||| |||||||||| || || || |||||  ||||||| ||||| |||||||| ||||||     |   | |  || |   |   ||  |          |||     ||     ||          |   |    || |  |||| ||  ||    |     |  ||   | |||| | | ||
TTCGTTTACTTTTGATAAAGTATTTGATCATTCGGCGTCACAAGAACATGTGTTCATAGAAATATCTCAACTTGTCCAAAGTGCCCTAGATGGCTATAAGgtatatcatttgtatgactataact---gagattaccttctctaactctagtaactatgatttttttggttcgttttccaatatctagttttcttagaatgcaactaaaaaccagtaaaccatttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|157651703|gb|EX451337.1|EX451337
EST:     TGTTCATTGAGATTTCCCAACTCGTCCAAAGCGCCCTTGATGGCTACAAG                         GTGTGCATATTTGCATATGGCCAAACTGGCTCGGGTAAAACATACACAATG
genomic: TGTTCATTGAGATTTCCCAACTCATCCAAAGCGCCCTTGATGGCTACAAGgtaacattta ... aacaactcagGTGTGCATATTTGCATATGGCCAAACTGGCTCGGGTAAAACATACACAATG