1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATTTGCCACTGTATTCATGGTGCTGACAGGGGTAGTTACAACCAATGGGCTCCATGAATGGGCATTGACAACGACCGAGATCATTGCTATTCTATATGCTgtaagcatgtttatattcccttgggcttatattacatagacttgtgtatgaccaatgcaatgctaatgtttatgatcctcctctagcatgttctaactgaatttattggtttgcttcaccag
species | Oryza sativa |
transcript | LOC_Os06g49500.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCATGAATGGGCATTGACAACGACCGAGATCATTGCTATTCTATATGCT GGAATTGTTGCATCTTGCTTGAATTACGCAATCATGACTTGGTCAAACAAAEST: gi|58609279|gb|CK037312.1|CK037312
genomic: TCCATGAATGGGCATTGACAACGACCGAGATCATTGCTATTCTATATGCTgtaagcatgt ... gcttcaccagGGAATTGTTGCATCTTGCTTGAATTACGCAATCATGACTTGGTCAAACAAA
EST: TCCATGAATGGGCATTGACAACGACCGAGATCATTGCTATTCTATATGCT GGAATTGTTGCATCTTGCTTGAATTACGCAATCATGACTTGGTCAAACAAAEST: gi|33682871|gb|CF311110.1|CF311110
genomic: TCCATGAATGGGCATTGACAACGACCGAGATCATTGCTATTCTATATGCTgtaagcatgt ... gcttcaccagGGAATTGTTGCATCTTGCTTGAATTACGCAATCATGACTTGGTCAAACAAA
EST: TCCATGAATGGGCATTGACAACGACCGAGATCATTGCTATTCTATATGCT GGAATTGTAGCATCTTGCTTGAATTACGCAATCATGACTTGGTCAAACAAA
genomic: TCCATGAATGGGCATTGACAACGACCGAGATCATTGCTATTCTATATGCTgtaagcatgt ... gcttcaccagGGAATTGTTGCATCTTGCTTGAATTACGCAATCATGACTTGGTCAAACAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTGCCACTGTATTCATGGTGCTGACAGGGGTAGTTACAACCAATGGGCTCCATGAATGGGCATTGACAACGACCGAGATCATTGCTATTCTATATGCTgtaagcatgtttatattcccttgggcttatattacatagacttgtgtatgaccaatgcaatgctaatgtttatgatcctcctctagcatgttctaactgaatttattggtttgcttcaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA