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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGATACATCTCCTGTCATCAGAAATACAAATGCCAGTGCTGTAGTACCCTCCTGGGACAATTCTATTGCTCAACCTTTAAGTGCAAGTCGCACGCAAGgtatgtttacctactatgctcataaacctctgtccaaaattaatgagaaaaatccaacaaatgccattgacgaactaaatttggcag

Basic information

species Oryza sativa
transcript LOC_Os06g45840.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218481447|gb|FG951027.1|FG951027
EST:     CTCCTGGGACAATTCTATTGCTCAACCTTTAAGTGCAAGTCGCACGCAAG                         GTACAGGTGCTGTTGCTACAAATAACTGCTCTAGTAGCATAGAGAGTCCTT
genomic: CTCCTGGGACAATTCTATTGCTCAACCTTTAAGTGCAAGTCGCACGCAAGgtatgtttac ... aatttggcagGTACAGGTGCTGTTGCTACAAATAACTGCTCTAGTAGCATAGAGAGTCCTT
EST: gi|218489538|gb|FG952484.1|FG952484
EST:     CAATTCTATTGCTCAACCTTTAAGTGCAAGTCGCACGCAAG                         GTACAGGTGCTGTTGCTACAAATAACTGCTCTAGTAGCATAGAGAGTCCTT
genomic: CAATTCTATTGCTCAACCTTTAAGTGCAAGTCGCACGCAAGgtatgtttac ... aatttggcagGTACAGGTGCTGTTGCTACAAATAACTGCTCTAGTAGCATAGAGAGTCCTT
EST: gi|218494859|gb|FG953214.1|FG953214
EST:     CCTGGGACAATTCTATTGCTCAACCTTTAAGTGCAAGTCGCACGCAAG                         GTACAGGTGCTGTTGCTACAAATAACTTGCTCTAGTAGCATAGAGAGTCCT
genomic: CCTGGGACAATTCTATTGCTCAACCTTTAAGTGCAAGTCGCACGCAAGgtatgtttac ... aatttggcagGTACAGGTGCTGTTGCTACAAATAAC-TGCTCTAGTAGCATAGAGAGTCCT
EST: gi|33678202|gb|CF306441.1|CF306441
EST:     CTCCTGGGACAATTCTATTGCTCAACCTTTAAGTGCAAGTCGCACGCAAG                         G----G-TGCTGTTGCTACAAATAACTGCTCTAGTAGCATAGAGAGTCCTT
genomic: CTCCTGGGACAATTCTATTGCTCAACCTTTAAGTGCAAGTCGCACGCAAGgtatgtttac ... aatttggcagGTACAGGTGCTGTTGCTACAAATAACTGCTCTAGTAGCATAGAGAGTCCTT
EST: gi|55408531|gb|CV720907.1|CV720907
EST:     CTCCTGGGACAATTCTATTGCTCAACCTTTAAGTGCAAGTCGCACGCAAG                         GTACAGGTGCTGTTGCTACAAATAACTGCTCTAGTAGCATAGAGAGTCCTT
genomic: CTCCTGGGACAATTCTATTGCTCAACCTTTAAGTGCAAGTCGCACGCAAGgtatgtttac ... aatttggcagGTACAGGTGCTGTTGCTACAAATAACTGCTCTAGTAGCATAGAGAGTCCTT
EST: gi|27577453|gb|CB000148.1|CB000148
EST:     CAAGTCGCACGCAAG                         GTACAGGGTGCTGTTGCTACAAATAACTGGCTCTAGTAGCATAGAGAGTCC
genomic: CAAGTCGCACGCAAGgtatgtttac ... aatttggcagGTACA-GGTGCTGTTGCTACAAATAACT-GCTCTAGTAGCATAGAGAGTCC