1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGAGATACTCCGAAAGCGAAGAGCTGGAAAACTCCCAGGAGATACAGCGTCTACTTTGAAAGCATGGTGGCAGGCTCACTCTAAATGGCCATACCCAACTgtatgtcagctcacagataccattatcaggccttcctgcatttccttttctaccactgatgctcatgtttcttaacctttatag
species | Oryza sativa |
transcript | LOC_Os06g43860.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTACTTTGAAAGCATGGTGGCAGGCTCACTCTAAATGGCCATACCCAACT GAGGAGGACAAGGCTCGCTTGGTGCAGGAAACAGGGTTGCAACTAAAACAGEST: gi|5803380|gb|AI978328.1|AI978328
genomic: CTACTTTGAAAGCATGGTGGCAGGCTCACTCTAAATGGCCATACCCAACTgtatgtcagc ... acctttatagGAGGAGGACAAGGCTCGCTTGGTGCAGGAAACAGGGTTGCAACTAAAACAG
EST: CTACTTTGAAAGCATGGTGGCAGGCTCACTCTAAATGGCCATACCCAACT GAGGAGGACAAGGCTCGCTTGGTGCAGGAAACAGGGTTGCAACTAAAGCAGEST: gi|23514961|gb|BU673870.1|BU673870
genomic: CTACTTTGAAAGCATGGTGGCAGGCTCACTCTAAATGGCCATACCCAACTgtatgtcagc ... acctttatagGAGGAGGACAAGGCTCGCTTGGTGCAGGAAACAGGGTTGCAACTAAAACAG
EST: CTACTTTGAAAGCATGGTGGCAGGCTCACTCTAAATGGCCATACCCAACT GAGGAGGACAAGGCTCGCTTGGTGCAGGAAACAGGGTTGCAACTAAAGCAGEST: gi|87011013|gb|CI286088.1|CI286088
genomic: CTACTTTGAAAGCATGGTGGCAGGCTCACTCTAAATGGCCATACCCAACTgtatgtcagc ... acctttatagGAGGAGGACAAGGCTCGCTTGGTGCAGGAAACAGGGTTGCAACTAAAACAG
EST: CTACTTTGAAAGCATGGTGGCAGGCTCACTCTAAATGGCCATACCCAACT GAGGAGGACAAGGCTCGCTTGGTGCAGGAAACAGGGTTGCAACTAAAACAG
genomic: CTACTTTGAAAGCATGGTGGCAGGCTCACTCTAAATGGCCATACCCAACTgtatgtcagc ... acctttatagGAGGAGGACAAGGCTCGCTTGGTGCAGGAAACAGGGTTGCAACTAAAACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGATACTCCGAAAGCGAAGAGCTGGAAAACTCCCAGGAGATACAGCGTCTACTTTGAAAGCATGGTGGCAGGCTCACTCTAAATGGCCATACCCAACTgtatgtcagctcacagataccattatcaggccttcctgcatttccttttctaccactgatgctcatgtttcttaacctttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG