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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCTTGTGCTCATTGCACTTGTGAACTTCCTGATAGTAGTGTATCTTCAGGTCTGCTGGGGAAGTGACGCTCATTATGCATTTTGATGTTTCAGCAATGgtgagagactggttaatctttgctgccttattcttgttggtatggcattgcctcatgggttttcttatgtgcaccag

Basic information

species Oryza sativa
transcript LOC_Os06g43190.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g43190.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G704277_T01 (Zea mays), 5'ss of exon 4
TACCTTGTGCTCATTGCACTTGTGAACTTCCTGATAGTAGTGTATCTTCAGGTCTGCTGGGGAAGTGACGCTCATTATGCATTTTGATGTTTCAGCAATGgtgagagactggttaatctttgctgccttattcttgttggtatggcattgcctcatgggttttcttatgtgcaccag
|| |||| |  || ||  ||  ||||||| |||| ||| |   || | ||| |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||| | ||   ||   | ||||   | |    |  ||||  |   | || | || |||    |||
TAACTTGAGTGCACTGGCCTCATGAACTTTCTGACAGTGGGAAATTTACAGATCTGCTGGGGAAGTGAAGCTCATTATGCATGTTGATGTCTCAGCAATGgtgagagactgattactattgtttgttgttttct---tagccctgtcttgcacc--tgattctgttgtgtctgacag

upper sequence: LOC_Os06g43190.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G704277_T02 (Zea mays), 5'ss of exon 5
TACCTTGTGCTCATTGCACTTGTGAACTTCCTGATAGTAGTGTATCTTCAGGTCTGCTGGGGAAGTGACGCTCATTATGCATTTTGATGTTTCAGCAATGgtgagagactggttaatctttgctgccttattcttgttggtatggcattgcctcatgggttttcttatgtgcaccag
                                                    |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||| | ||   ||   | ||||   | |    |  ||||  |   | || | || |||    |||
---------------------------------------------------ATCTGCTGGGGAAGTGAAGCTCATTATGCATGTTGATGTCTCAGCAATGgtgagagactgattactattgtttgttgttttct---tagccctgtcttgcacc--tgattctgttgtgtctgacag