1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AACACTCCAAATCCATATGAGCAAGCAATATCTATTATTGGAAGGACACTTTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACGgtaagttcattgttcccattttccattttgatcacttggtgtgtgctcagtagcatatttaaagaacaatgctgatctaatgcctcctttgtggctttgtctactggcag
species | Oryza sativa |
transcript | LOC_Os06g40650.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACG CATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCATEST: gi|33677878|gb|CF306117.1|CF306117
genomic: TTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACGgtaagttcat ... ctactggcagCATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCAT
EST: TTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACG CATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCATEST: gi|58692386|gb|CK081073.1|CK081073
genomic: TTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACGgtaagttcat ... ctactggcagCATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCAT
EST: TTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACG CATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCATEST: gi|66928286|gb|CX115134.1|CX115134
genomic: TTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACGgtaagttcat ... ctactggcagCATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCAT
EST: TCAGCTTTTGATGAAGATAA-TTGA-T-C-T-C--TGGA-TTGGTGACG CATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCATEST: gi|29632713|gb|CB637722.1|CB637722
genomic: TCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACGgtaagttcat ... ctactggcagCATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCAT
EST: TTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACG CATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCATEST: gi|300216150|gb|HO087935.1|HO087935
genomic: TTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACGgtaagttcat ... ctactggcagCATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCAT
EST: TTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACG CATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCATEST: gi|58695004|gb|CK083691.1|CK083691
genomic: TTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACGgtaagttcat ... ctactggcagCATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCAT
EST: TTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACG CATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCATEST: gi|33677349|gb|CF305588.1|CF305588
genomic: TTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACGgtaagttcat ... ctactggcagCATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCAT
EST: TTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACG CATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCATEST: gi|116875525|gb|EC366033.1|EC366033
genomic: TTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACGgtaagttcat ... ctactggcagCATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCAT
EST: TTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACG CATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCAT
genomic: TTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACGgtaagttcat ... ctactggcagCATCAACTCATGATCAGGAGGTATTCAGCTTTTATCCAGAGAACCGCCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACACTCCAAATCCATATGAGCAAGCAATATCTATTATTGGAAGGACACTTTCAGCTTTTGATGAAGATAATTTGATTCCTTGCTTTGGATTTGGTGACGgtaagttcattgttcccattttccattttgatcacttggtgtgtgctcagtagcatatttaaagaacaatgctgatctaatgcctcctttgtggctttgtctactggcag
- - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA