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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGATGAAGACCAAGAGGATCCTGATGAAAGGCACCATGCTGATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAGgtatttgtttctattcagttctgtaaccgttcaggggattctagcagttagaatcatatgacatggtctgatgtatatccttttgtcttttag

Basic information

species Oryza sativa
transcript LOC_Os06g38470.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86523321|gb|CI163527.1|CI163527
EST:     ATGTCAAACCTTTGGATGACTCAGGAAG                         GAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
genomic: ATGTCAAACCTTTGGATGACTCAGGAAGgtatttgttt ... tgtcttttagGAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
EST: gi|58674694|gb|CK063381.1|CK063381
EST:     GATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAG                         GAGGACCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
genomic: GATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAGgtatttgttt ... tgtcttttagGAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
EST: gi|5455320|gb|AU075563.1|AU075563
EST:     GATTCTGATGTGGANATGGATGATGTCAAACCTTTGGATGACTCAGGAAG                         GAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
genomic: GATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAGgtatttgttt ... tgtcttttagGAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
EST: gi|66925626|gb|CX112474.1|CX112474
EST:     CTTTGGATGACTCAGGAAG                         GAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
genomic: CTTTGGATGACTCAGGAAGgtatttgttt ... tgtcttttagGAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
EST: gi|55408752|gb|CV721128.1|CV721128
EST:     GATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAG                         GAGGAGCAGTATTCACAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
genomic: GATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAGgtatttgttt ... tgtcttttagGAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
EST: gi|88265007|gb|CI368781.1|CI368781
EST:     GATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAG                         GAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
genomic: GATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAGgtatttgttt ... tgtcttttagGAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
EST: gi|29685767|gb|CB682042.1|CB682042
EST:     GATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAG                         GAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
genomic: GATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAGgtatttgttt ... tgtcttttagGAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
EST: gi|87009873|gb|CI277374.1|CI277374
EST:     GATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAG                         GAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
genomic: GATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAGgtatttgttt ... tgtcttttagGAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
EST: gi|86430977|gb|CI083400.1|CI083400
EST:     GATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAG                         GAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
genomic: GATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAGgtatttgttt ... tgtcttttagGAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
EST: gi|86499424|gb|CI142057.1|CI142057
EST:     GATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAG                         GAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
genomic: GATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAGgtatttgttt ... tgtcttttagGAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
EST: gi|29680280|gb|CB676555.1|CB676555
EST:     GATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAG                         GAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA
genomic: GATTCTGATGTGGAAATGGATGATGTCAAACCTTTGGATGACTCAGGAAGgtatttgttt ... tgtcttttagGAGGAGCAGTATTCAGAATGTGAGAGTTAAGAGAGAGTCTGCTGAAACAGA