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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTTTCAGAGAAGACTGTAGTTCTTGTGACTCACCAGGTTGAATTTCTCACCGAGACTGATCGGATTCTGgtaagttgatcttcagactatcatttagccatatcaaagggtatcaaagatccttcagatgaatgatctgccattgtttcaacag

Basic information

species Oryza sativa
transcript LOC_Os06g36650.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g36650.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G113203_T01 (Zea mays), 5'ss of exon 3
----------------CACTTTCAGAGAAGACTGTAGTTCTTGTGACTCACCAGGTTGAATTTCTCACCGAGACTGATCGGATTCTGgtaagttgatcttcagactatcatttagccatatcaaagggtatcaaagatccttcagatgaatgatctgccattgtttcaacag
                ||||| ||||||||||||| || |||||||| ||||||||||||||||| || || || ||| ||||||||||||||||||  ||  |  | || |      |         ||||| || ||||     |  || |||| | ||   ||||||||
GAATGTGTGATGACAGCACTTGCAGAGAAGACTGTCGTCCTTGTGACCCACCAGGTTGAATTTCTGACTGAAACCGATAGGATTCTGgtaagttgatactctcaaca-caatcgcttgtgattctttatatcagaggtcctc--agttcataatctacaatgcgttcaacag