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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGACATGCCGCAGATCGAGCACCTCCTCCAGACCGCCGAGGCCATCCGCAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaattaaactattttataaccgccacaaaaaccgtcactgtaattgcacatccaccgcgtcgccgcaatgaactgataggcaggcctcacacgataca...

Basic information

species Oryza sativa
transcript LOC_Os06g36560.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g36560.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G126900_T01 (Zea mays), 5'ss of exon 2
CTCGACATGCCGCAGATCGAGCACCTCCTCCAGACCGCCGAGGCCATCCGCAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaa--ttaaactattttataaccgccacaaaaaccgtcactgtaattgcacatccaccgcgtcgccgcaatg-aactgataggcaggcctcacacgataca
|| |||||||| |||||||||||||| || |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || |||||||||||||     |  |||  ||  |  |   |  |    | | |  || || ||  | ||  || ||   |   |||  |||| |  | ||    |||         
CTGGACATGCCCCAGATCGAGCACCTGCTGCAGACCGCCGAGGCCATCCGCAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctgcactgcttgcttgcttgctta----ctgccgatgcaactgt-cgtc-gccacgcttctctaatctaactcactgtcat-tttcag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29644701|gb|CB649708.1|CB649708
EST:     CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACG                         ATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
genomic: CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaattaaa ... tctttttcagATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
EST: gi|29660840|gb|CB657115.1|CB657115
EST:     CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACG                         ATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
genomic: CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaattaaa ... tctttttcagATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
EST: gi|58587863|gb|CF986171.1|CF986171
EST:     AAGGATTTCCCCGACGAGGACTGGGCTCCACCTCACTGGCCTCATCCACG                         ATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
genomic: AAGGATTTCCCCGACGAGGACT-GGCTCCACCTCACTGGCCTCATCCACGgtaaattaaa ... tctttttcagATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
EST: gi|29661872|gb|CB658147.1|CB658147
EST:     CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACG                         ATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
genomic: CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaattaaa ... tctttttcagATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
EST: gi|29656267|gb|CB652542.1|CB652542
EST:     CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACG                         ATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
genomic: CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaattaaa ... tctttttcagATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
EST: gi|29676120|gb|CB672395.1|CB672395
EST:     CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACG                         ATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
genomic: CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaattaaa ... tctttttcagATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
EST: gi|29656245|gb|CB652520.1|CB652520
EST:     CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACG                         ATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
genomic: CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaattaaa ... tctttttcagATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
EST: gi|38475187|gb|CF959320.1|CF959320
EST:     CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACG                         ATCTGGGGCA-GGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCAC
genomic: CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaattaaa ... tctttttcagATCTGGG-CAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCAC
EST: gi|29680345|gb|CB676620.1|CB676620
EST:     CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACG                         ATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
genomic: CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaattaaa ... tctttttcagATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
EST: gi|29657369|gb|CB653644.1|CB653644
EST:     CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACG                         ATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
genomic: CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaattaaa ... tctttttcagATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
EST: gi|29642558|gb|CB647565.1|CB647565
EST:     CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACG                         ATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
genomic: CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaattaaa ... tctttttcagATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
EST: gi|29669886|gb|CB666161.1|CB666161
EST:     CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACG                         ATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
genomic: CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaattaaa ... tctttttcagATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
EST: gi|29639892|gb|CB644901.1|CB644901
EST:     CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACG                         ATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
genomic: CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaattaaa ... tctttttcagATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
EST: gi|66920340|gb|CX107188.1|CX107188
EST:     CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACG                         ATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
genomic: CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaattaaa ... tctttttcagATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
EST: gi|29658930|gb|CB655205.1|CB655205
EST:     CCACCTCACTGGCCTCATCCACG                         ATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
genomic: CCACCTCACTGGCCTCATCCACGgtaaattaaa ... tctttttcagATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
EST: gi|87009635|gb|CI309156.1|CI309156
EST:     CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACG                         ATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
genomic: CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaattaaa ... tctttttcagATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
EST: gi|29659887|gb|CB656162.1|CB656162
EST:     CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACG                         ATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT
genomic: CAAGGATTTCCCCGACGAGGACTGGCTCCACCTCACTGGCCTCATCCACGgtaaattaaa ... tctttttcagATCTGGGCAAGGTGCTGCTGCATCCCAGCTTTGGGGAGCTCCCACAGTGGT