1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAAAGAGAAGATACTAATTCTGATAGACACTTGGCAAGAAGCTTTTGGTGGTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTGgtattatttcttgtgctattcacttgctatattaactatcctattcctcactattatttttcatcttctgtaaaattccacgtcatgtaatactattcac...
species | Oryza sativa |
transcript | LOC_Os06g22650.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTG CGCGCTGGAGCTGTATTTCCTCAAAGACCAGACAGCTCTGTGCCAATCTATEST: gi|300215825|gb|HO088451.1|HO088451
genomic: GTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTGgtattatttc ... gatttgtcagCGCGCTGGAGCTGTATTTCCTCAAAGACCAGACAGCTCTGTGCCAATCTAT
EST: GTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTG CGCGCTGGAGCTGTATTTCCTCAAAGACCAGACAGCTCTGTGCCAATCTATEST: gi|58682180|gb|CK070867.1|CK070867
genomic: GTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTGgtattatttc ... gatttgtcagCGCGCTGGAGCTGTATTTCCTCAAAGACCAGACAGCTCTGTGCCAATCTAT
EST: GTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTG CGCGCTGGAGCTGTATTTCCTCAAAGACCAGACAGCTCTGTGCCAATCTATEST: gi|58668792|gb|CK057478.1|CK057478
genomic: GTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTGgtattatttc ... gatttgtcagCGCGCTGGAGCTGTATTTCCTCAAAGACCAGACAGCTCTGTGCCAATCTAT
EST: GTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTG CGCGCTGGAGCTGTATTTCCTCAAAGACCAGACAGCTCTGTGEST: gi|58670501|gb|CK059187.1|CK059187
genomic: GTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTGgtattatttc ... gatttgtcagCGCGCTGGAGCTGTATTTCCTCAAAGACCAGACAGCTCTGTG
EST: GTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTG CGCGCTGGAGCTGTATTTCCTCAAAGACCAGACAGCTCTGTGCCAATCTATEST: gi|58668384|gb|CK057070.1|CK057070
genomic: GTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTGgtattatttc ... gatttgtcagCGCGCTGGAGCTGTATTTCCTCAAAGACCAGACAGCTCTGTGCCAATCTAT
EST: GTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTG CGCGCTGGAGCTGTATTTCCTCAAAGACCAGACAGCTCTGTGCCAATCTATEST: gi|87017040|gb|CI286176.1|CI286176
genomic: GTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTGgtattatttc ... gatttgtcagCGCGCTGGAGCTGTATTTCCTCAAAGACCAGACAGCTCTGTGCCAATCTAT
EST: GTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTG CGCGCTGGAGCTGTATTTCCTCAAAGACCAGACAGCTCTGTGCCAATCTATEST: gi|29630559|gb|CB635568.1|CB635568
genomic: GTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTGgtattatttc ... gatttgtcagCGCGCTGGAGCTGTATTTCCTCAAAGACCAGACAGCTCTGTGCCAATCTAT
EST: GTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTG CGCGCTGGAGCTGTATTTCCTCAAAGACCAGACAGCTCTGTGCCAATCTAT
genomic: GTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTGgtattatttc ... gatttgtcagCGCGCTGGAGCTGTATTTCCTCAAAGACCAGACAGCTCTGTGCCAATCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAGAGAAGATACTAATTCTGATAGACACTTGGCAAGAAGCTTTTGGTGGTTCCCGTGCAAGATATCCGCAATATTATGTAGCATATCAAGAGCTCCTGgtattatttcttgtgctattcacttgctatattaactatcctattcctcactattatttttcatcttctgtaaaattccacgtcatgtaatactattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT