1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGGTGAGAAGGTGGCAACGCCACAAGTTAATGAGGATGATTTGACACTTGAGAGGCTTGAAGAATTTCGTTCACAACTACAGGAGCTCGAAAAAGAGAAGgtacatgtaacctgtataatttcttcatttggtgctagctgtgatgcctgaccattgctgacaagatttggttcccttgggaattggtttgcag
species | Oryza sativa |
transcript | LOC_Os06g20370.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTTCACAACTACAGGAGCTCGAAAAAGAGAAG AGCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTCEST: gi|58673199|gb|CK061885.1|CK061885
genomic: GTTCACAACTACAGGAGCTCGAAAAAGAGAAGgtacatgtaa ... tggtttgcagAGCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTC
EST: AACTACAGGAGCTCGAAAAAGAGAAG AGCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTCEST: gi|44677506|gb|CR290940.1|CR290940
genomic: AACTACAGGAGCTCGAAAAAGAGAAGgtacatgtaa ... tggtttgcagAGCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTC
EST: AGAGGCTTGAAGAATTTCGTTCACAACTACAGGAGCTCGAAAAAGGGAAG AGCAATAGTTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTCEST: gi|300215846|gb|HO088472.1|HO088472
genomic: AGAGGCTTGAAGAATTTCGTTCACAACTACAGGAGCTCGAAAAAGAGAAGgtacatgtaa ... tggtttgcagAGCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTC
EST: AGAGGCTTGAAGAATTTCGTTCACAACTACAGGAGCTCGAAAAAGAGAAG AGCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTCEST: gi|58663817|gb|CK052503.1|CK052503
genomic: AGAGGCTTGAAGAATTTCGTTCACAACTACAGGAGCTCGAAAAAGAGAAGgtacatgtaa ... tggtttgcagAGCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTC
EST: AGAGGCTTGAAGAATTTCGTTCACAACTACAGGAGCTCGAAAAAGAGAAG AGCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTCEST: gi|58673988|gb|CK062674.1|CK062674
genomic: AGAGGCTTGAAGAATTTCGTTCACAACTACAGGAGCTCGAAAAAGAGAAGgtacatgtaa ... tggtttgcagAGCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTC
EST: AGAGGCTTGAAGAATTTCGTTCACAACTACAGGAGCTCGAAAAAGAGAAG AGCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTC
genomic: AGAGGCTTGAAGAATTTCGTTCACAACTACAGGAGCTCGAAAAAGAGAAGgtacatgtaa ... tggtttgcagAGCAATAGGTTGGAGAAGGTTCTTGATTATGTGAGCATGATACATAATCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTGAGAAGGTGGCAACGCCACAAGTTAATGAGGATGATTTGACACTTGAGAGGCTTGAAGAATTTCGTTCACAACTACAGGAGCTCGAAAAAGAGAAGgtacatgtaacctgtataatttcttcatttggtgctagctgtgatgcctgaccattgctgacaagatttggttcccttgggaattggtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA