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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACATCAAGCGGAACGAGGTGGTGCTCGGCGCCAGCGAGGCCATCAACGAGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtagtactagcaactagtaccactgcactcgagttactgctactcttattgacactactgcttgtggtaaagttagtaactgtgttgctgacgtgacgag...

Basic information

species Oryza sativa
transcript LOC_Os06g14540.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58673930|gb|CK062616.1|CK062616
EST:     AACGTCCTCATCTCCAAG                         GAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCC
genomic: AACGTCCTCATCTCCAAGgtagtactag ... gattttgcagGAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCC
EST: gi|58656381|gb|CK045061.1|CK045061
EST:     AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAG                         GAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCC
genomic: AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtagtactag ... gattttgcagGAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCC
EST: gi|58654514|gb|CK043194.1|CK043194
EST:     AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAG                         GAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCC
genomic: AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtagtactag ... gattttgcagGAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCC
EST: gi|58672435|gb|CK061121.1|CK061121
EST:     AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAG                         GAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCC
genomic: AGTTCGGCTGGGACAACAAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtagtactag ... gattttgcagGAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCC
EST: gi|58685941|gb|CK074628.1|CK074628
EST:     AAGCACGCCGGCATCAACGTCCTCATCTCCAAG                         GAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCC
genomic: AAGCACGCCGGCATCAACGTCCTCATCTCCAAGgtagtactag ... gattttgcagGAGGTCCTGATGGGGAAGGACGAGTATTTCCAGTCGTTCCGCGTGAACGCC