1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAAACACCAGAGCAGgtatatctttgcgcttttatgtgcaaatgcttatttaatccctttatctgcctttcagggtatttggctattttgttgcctagtttcactagcattttcttattttaaattctgtcatgtatttgagcag
species | Oryza sativa |
transcript | LOC_Os06g13810.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAAACACCAGAGCAG TTCAAGCAAGCTGAAGACACTGTAAACAAACTTGATTTGGATGGGCTTGTTEST: gi|218497540|gb|FG953486.1|FG953486
genomic: GATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAAACACCAGAGCAGgtatatcttt ... atttgagcagTTCAAGCAAGCTGAAGACACTGTAAACAAACTTGATTTGGATGGGCTTGTT
EST: GATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAAACACCAGAGCAG TTCAAGCAAGCTGAAGACACTGTAAACAAACTTGATTTGGATGGGCTTGTTEST: gi|58675628|gb|CK064315.1|CK064315
genomic: GATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAAACACCAGAGCAGgtatatcttt ... atttgagcagTTCAAGCAAGCTGAAGACACTGTAAACAAACTTGATTTGGATGGGCTTGTT
EST: GATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAAACACCAGAGCAG TTCAAGCAAGCTGAAGACACTGTAAACAAACTTGATTTGGATGGGCTTGTTEST: gi|5003496|gb|AU068645.1|AU068645
genomic: GATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAAACACCAGAGCAGgtatatcttt ... atttgagcagTTCAAGCAAGCTGAAGACACTGTAAACAAACTTGATTTGGATGGGCTTGTT
EST: GAAACACCAGAGCAG TTCAAGCAAGCTGAAGACACTGTAAACAAACTTGATTTGGATGGGCTTGTT
genomic: GAAACACCAGAGCAGgtatatcttt ... atttgagcagTTCAAGCAAGCTGAAGACACTGTAAACAAACTTGATTTGGATGGGCTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAAACACCAGAGCAGgtatatctttgcgcttttatgtgcaaatgcttatttaatccctttatctgcctttcagggtatttggctattttgttgcctagtttcactagcattttcttattttaaattctgtcatgtatttgagcag
- - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - GAGCAG