1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATTTCGTATGATCCGAATTTGAGGCTCCCACTGTGGTCATCAGCTGATGATGCTAGAGATGGTATACTGAGCATATGGGAAACTGCTGATGTTATCAAGgtaaagtttaacagggaaagcaatttataggttaaagaagtgcttgatttgattgtgcattccttttgaaacag
species | Oryza sativa |
transcript | LOC_Os06g12600.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGCTAGAGATGGTATTCTGAGCATATGGGAAACTGCTGATGTTATCAAG ATTAGTGAAGAGGAGGTTTCCTTTTTGACGAAAGGGGAGGATCCATATGATEST: gi|29632918|gb|CB637927.1|CB637927
genomic: ATGCTAGAGATGGTATACTGAGCATATGGGAAACTGCTGATGTTATCAAGgtaaagttta ... tttgaaacagATTAGTGAAGAGGAGGTTTCCTTTTTGACGAAAGGGGAGGATCCATATGAT
EST: ATGCTAGAGATGGTATACTGAGCATATGGGAAACTGCTGATGTTATCAAG ATTAGTGAAGAGGAGGTTTCCTTTTTGACGAAAGGGGAGGATCCATATGATEST: gi|66917120|gb|CX103968.1|CX103968
genomic: ATGCTAGAGATGGTATACTGAGCATATGGGAAACTGCTGATGTTATCAAGgtaaagttta ... tttgaaacagATTAGTGAAGAGGAGGTTTCCTTTTTGACGAAAGGGGAGGATCCATATGAT
EST: ATGCTAGAGATGGTATACTGAGCATATGGGAAACTGCTGATGTTATCAAG ATTAGTGAAGAGGAGGTTTCCTTTTTGACGAAAGGGGAGGATCCATATGATEST: gi|86859066|gb|CI276999.1|CI276999
genomic: ATGCTAGAGATGGTATACTGAGCATATGGGAAACTGCTGATGTTATCAAGgtaaagttta ... tttgaaacagATTAGTGAAGAGGAGGTTTCCTTTTTGACGAAAGGGGAGGATCCATATGAT
EST: ATGCTAGAGATGGTATACTGAGCATATGGGAAACTGCTGATGTTATCAAG ATTAGTGAAGAGGAGGTTTCCTTTTTGACGAAAGGGGAGGATCCATATGATEST: gi|29685991|gb|CB682266.1|CB682266
genomic: ATGCTAGAGATGGTATACTGAGCATATGGGAAACTGCTGATGTTATCAAGgtaaagttta ... tttgaaacagATTAGTGAAGAGGAGGTTTCCTTTTTGACGAAAGGGGAGGATCCATATGAT
EST: ATGCTAGAGATGGTATACTGAGCATATGGGAAACTGCTGATGTTATCAAG ATTAGTGAAGAGGAGGTTTCCTTTTTGACGAAAGGGGAGGATCCATATGAT
genomic: ATGCTAGAGATGGTATACTGAGCATATGGGAAACTGCTGATGTTATCAAGgtaaagttta ... tttgaaacagATTAGTGAAGAGGAGGTTTCCTTTTTGACGAAAGGGGAGGATCCATATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTTCGTATGATCCGAATTTGAGGCTCCCACTGTGGTCATCAGCTGATGATGCTAGAGATGGTATACTGAGCATATGGGAAACTGCTGATGTTATCAAGgtaaagtttaacagggaaagcaatttataggttaaagaagtgcttgatttgattgtgcattccttttgaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT