1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGAAAAGAAAACCTGAGTAAACCTGATGATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGgtattcttgttcaaaactaaaatcatcacaactattagggaaatgcaactctagtatatggatgttcatgctttattccatccctccaaagtgtttgagg...
species | Oryza sativa |
transcript | LOC_Os06g12220.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAG TCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAGEST: gi|86852803|gb|CI323112.1|CI323112
genomic: GATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGgtattcttgt ... cttgttgcagTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAG
EST: GATATATGGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAG TGTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAGEST: gi|33682572|gb|CF310811.1|CF310811
genomic: GATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGgtattcttgt ... cttgttgcagTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAG
EST: GATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAG TCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGEST: gi|109711581|gb|CI013186.1|CI013186
genomic: GATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGgtattcttgt ... cttgttgcagTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGG
EST: GATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAG TCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAGEST: gi|396941186|gb|HO188395.1|HO188395
genomic: GATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGgtattcttgt ... cttgttgcagTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAG
EST: GATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAG TCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCGATCTATCTTGGAGEST: gi|117221019|gb|CT852619.1|CT852619
genomic: GATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGgtattcttgt ... cttgttgcagTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAG
EST: GATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAG TCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCGATCTATCTTGGAGEST: gi|218478179|gb|FG968243.1|FG968243
genomic: GATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGgtattcttgt ... cttgttgcagTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAG
EST: GATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAG TCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCGATCTATCTTGGAGEST: gi|33662702|gb|CF293669.1|CF293669
genomic: GATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGgtattcttgt ... cttgttgcagTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAG
EST: GATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAG TTTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATTTTGGAG
genomic: GATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGgtattcttgt ... cttgttgcagTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAAAAGAAAACCTGAGTAAACCTGATGATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGgtattcttgttcaaaactaaaatcatcacaactattagggaaatgcaactctagtatatggatgttcatgctttattccatccctccaaagtgtttgagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccctcc