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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGAATGTTGAATCGCCTCCTCGTGCTCGTGAAAATGGCAACGCCAATGGTGGCAATATGTATCAACCACTGCCATTTATGTTTTCTTCTGGATTCAGgttcattttcatttttcttactttagtataactagatactttgtagtagatactttatgtggacatgctattttgggttcattgatgttgaagtgccaca...

Basic information

species Oryza sativa
transcript LOC_Os06g08400.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g08400.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G017845_T04 (Zea mays), 5'ss of exon 4
GTTTGAATGTTGAATCGCCTCCTCGTGCTCGTGAAAATGGCAACGCCAATGGTGGCAATATGTATCAACCACTGCCATTTATGTTTTCTTCTGGATTCAGgttcattttcatttttcttactttagtataactagatactttgtagtagatactttatgtggacatgctattttgggttcattgatg-ttgaagtgccaca-
|    | ||   |  |   ||  |   |||||||||||||||  ||||||||||| |||   ||||| ||| | ||||||||||| || ||||||||||||||||||| || |||  |||||  ||| ||     ||| |||   | |  |    |   |||  |||  ||  |   |      ||   |||| |   |   
GCGAAACTGGCAATGCATATCAGCCACCTCGTGAAAATGGCAGTGCCAATGGTGGAAATGCATATCACCCATTACCATTTATGTTCTCATCTGGATTCAGgttcattt-caatttggttacta-agtttactattatagttttgtgcaatttgagttgatggttatgaaatagtaaataagcatataactgaactaatattt