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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCTGTCGAGTCTTTACTCCGGGAGCGTGTGCATCTGGGACTATCAGTCGCAGgtaagagttctagttgcattttaggttcattgtttccccattaagcaagactaagactcaactacttttgaagtaaatatgaatattcaaaactgtactc...

Basic information

species Oryza sativa
transcript LOC_Os06g05180.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G000645_T03 (Zea mays), 5'ss of exon 4
GATCCTGTCGAGTCTTTACTCCGGGAGCGTGTGCATCTGGGACTATCAGTCGCAGgtaa----gagttctagttgcattttag-gttcattgtttcc--ccattaagcaagactaagactcaactacttttgaagtaaatatgaatattcaaaactgtactc
|||||||||||| || ||||| ||||| || ||||||||||| |||||| | ||||||      |  | |  ||| |    |  || |||   |||   |||||   |   | || | | |     |||||    || |   |   |  ||   || |    
GATCCTGTCGAGCCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAGGCACAGgtagcccgaacctgtttttgtaaagcaatgtgcatgaattcataccattctacttaa-taggccgctttggcttttc---tagaggggtgcaaccaggtctatt---

upper sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 3
GATCCTGTCGAGTCTTTACTCCGGGAGCGTGTGCATCTGGGACTATCAGTCGCAGgtaagagttctagttgcattttaggttcattgtttccccattaagcaagactaagactcaactacttttgaagtaaatatgaat-attcaaaactgtactc-
||||||||||||||| ||||| ||||| || ||||||||||| |||||  | ||||||||     |||   |     |||||  | |   | ||||   ||| || |      ||| |  |  | ||  | |||||||  |  || |||  ||    
GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgttagggcccgaacaggtttttggaaacgccat-gtgcatgagttcataccaa-tgttagtaaataagatatgaaccaaacataacattagggt