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CCTTCAAAGGCATTTCAGCAATACACATATGAGTCTTGTTCACAACAGGGCTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAGgtaaataacaccccttctctctcagatgttgtgtgtgtgtgtatgtgtgtgtaagggctctctcagatgttcaagagcttgtacctgctgagtgctaacttctttcctgcatcatgcttcag
species | Oryza sativa |
transcript | LOC_Os06g02550.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAG GTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCGEST: gi|33678601|gb|CF306840.1|CF306840
genomic: CTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAGgtaaataaca ... catgcttcagGTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCG
EST: CTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAG GTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCGEST: gi|58695956|gb|CK084643.1|CK084643
genomic: CTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAGgtaaataaca ... catgcttcagGTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCG
EST: CTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAG GTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCGEST: gi|29638208|gb|CB643217.1|CB643217
genomic: CTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAGgtaaataaca ... catgcttcagGTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCG
EST: CTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAG GTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCGEST: gi|29679855|gb|CB676130.1|CB676130
genomic: CTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAGgtaaataaca ... catgcttcagGTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCG
EST: CTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAG GTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCGEST: gi|58693047|gb|CK081734.1|CK081734
genomic: CTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAGgtaaataaca ... catgcttcagGTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCG
EST: CTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAG GTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCGEST: gi|29679854|gb|CB676129.1|CB676129
genomic: CTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAGgtaaataaca ... catgcttcagGTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCG
EST: CTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAG GTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCGEST: gi|29632166|gb|CB637175.1|CB637175
genomic: CTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAGgtaaataaca ... catgcttcagGTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCG
EST: CTTTACTCTCCAGCTAGTAAAAATGGAGAG GTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCGEST: gi|58695198|gb|CK083885.1|CK083885
genomic: CTTTACTCTCCAGCTAGTAAAAATGGAGAGgtaaataaca ... catgcttcagGTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCG
EST: CTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAG GTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCG
genomic: CTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAGgtaaataaca ... catgcttcagGTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTCAAAGGCATTTCAGCAATACACATATGAGTCTTGTTCACAACAGGGCTCTTCTAGAATAAGACCAGCTTTACTCTCCAGCTAGTAAAAATGGAGAGgtaaataacaccccttctctctcagatgttgtgtgtgtgtgtatgtgtgtgtaagggctctctcagatgttcaagagcttgtacctgctgagtgctaacttctttcctgcatcatgcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA