1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCCTGCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagttttttctcttctgttatactatattcagttcaatcatcatgcctaggatcaatcaatcaataaatcctaattaagccaaacaacatatatatgatatgatatgattgcag
species | Oryza sativa |
transcript | LOC_Os05g51670.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGGEST: gi|218481702|gb|FG969560.1|FG969560
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGGEST: gi|38480755|gb|CF964844.1|CF964844
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAGCAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGANCCAAACTGGEST: gi|58588964|gb|CF987272.1|CF987272
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACGGGEST: gi|58690277|gb|CK078964.1|CK078964
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGGEST: gi|218505351|gb|FG968507.1|FG968507
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGGEST: gi|33798368|gb|CF325041.1|CF325041
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCEST: gi|218494080|gb|FG967420.1|FG967420
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTC
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGGEST: gi|29621545|gb|CB626556.1|CB626556
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGGEST: gi|33693008|gb|CF321247.1|CF321247
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCEST: gi|218497254|gb|FG946482.1|FG946482
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCC
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGGEST: gi|33682645|gb|CF310884.1|CF310884
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGGEST: gi|33680697|gb|CF308936.1|CF308936
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCCGGGATCTGCATGCCTCEST: gi|33692560|gb|CF320799.1|CF320799
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCC-GGGATCTGCATGCCTC
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCEST: gi|29684846|gb|CB681121.1|CB681121
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTC
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGGEST: gi|33679540|gb|CF307779.1|CF307779
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGGAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCEST: gi|33686980|gb|CF315219.1|CF315219
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTC
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGGEST: gi|33681007|gb|CF309246.1|CF309246
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGAAGAATCCCCACCTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGGEST: gi|218488558|gb|FG963890.1|FG963890
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGGEST: gi|33681223|gb|CF309462.1|CF309462
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCEST: gi|218482145|gb|FG968615.1|FG968615
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTC
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGGEST: gi|33685111|gb|CF313350.1|CF313350
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGGEST: gi|33688841|gb|CF317080.1|CF317080
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAEST: gi|29662182|gb|CB658457.1|CB658457
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGA
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGGEST: gi|33661837|gb|CF292804.1|CF292804
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: ACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGGEST: gi|33686993|gb|CF315232.1|CF315232
genomic: ACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAEST: gi|33684323|gb|CF312562.1|CF312562
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGA
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACCATGTGCCGGGATCTGCATGCCTCEST: gi|218501599|gb|FG966518.1|FG966518
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGAC-ATGTGCCGGGATCTGCATGCCTC
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGGEST: gi|58689696|gb|CK078383.1|CK078383
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
EST: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAG CTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
genomic: GCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagt ... atgattgcagCTGGTAATCGAAGACATGTGCCGGGATCTGCATGCCTCAGACCCAAACTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGTTCTCATCATCCGCAACTGTCTACGGGTGGCCCAAGGAGGTGCCCTGCACTGAAGAATCCCCACTTTGTGCAATGAACCCCTACGGCAGAACAAAGgtactccagttttttctcttctgttatactatattcagttcaatcatcatgcctaggatcaatcaatcaataaatcctaattaagccaaacaacatatatatgatatgatatgattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA