1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGACGATGAAATCGCTCGCAGCCTTAGGATGGTCAAGTATTCAGCATTCAACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGgtaagcgcaccttccaattcgctattaaccatatagtatcagcatctgttgattagcctaagtccatgtcaacatttcatatctcag
species | Oryza sativa |
transcript | LOC_Os05g47670.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAG GAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGCEST: gi|38474313|gb|CF958445.1|CF958445
genomic: ACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGgtaagcgcac ... catatctcagGAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGC
EST: ACCCCAAGCATTTCGCAACAGAAGTAGAAAGGAATCGCAGTATTCGTCAG GAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGCEST: gi|38471401|gb|CF955532.1|CF955532
genomic: ACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGgtaagcgcac ... catatctcagGAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGC
EST: ACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAG GAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGCEST: gi|29662570|gb|CB658845.1|CB658845
genomic: ACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGgtaagcgcac ... catatctcagGAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGC
EST: ACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAG GAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGCEST: gi|87026428|gb|CI252382.1|CI252382
genomic: ACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGgtaagcgcac ... catatctcagGAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGC
EST: ACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAG GAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGCEST: gi|88226530|gb|CI226446.1|CI226446
genomic: ACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGgtaagcgcac ... catatctcagGAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGC
EST: ACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAG GAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGCEST: gi|86494294|gb|CI136927.1|CI136927
genomic: ACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGgtaagcgcac ... catatctcagGAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGC
EST: ACCCCCAGCATTTTGCAACAGAAGTAGAAAGGAATTCCAGTATTTGTCAG GAAGAATTTGAAGCAAATGAGGAAACCAGGGAGGCTGATCTGTGGCCACAGEST: gi|29659759|gb|CB656034.1|CB656034
genomic: ACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGgtaagcgcac ... catatctcagGAAGAATTTGAAGCAAATGAGGAAAC-AGGGAGGCTGATCTGTGGCCACAG
EST: ACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAG GAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGCEST: gi|27545904|gb|CA764245.2|CA764245
genomic: ACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGgtaagcgcac ... catatctcagGAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGC
EST: ACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAG GAGGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGC
genomic: ACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGgtaagcgcac ... catatctcagGAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACGATGAAATCGCTCGCAGCCTTAGGATGGTCAAGTATTCAGCATTCAACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGgtaagcgcaccttccaattcgctattaaccatatagtatcagcatctgttgattagcctaagtccatgtcaacatttcatatctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA