1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATATCAGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTGgtaattgataattccaatatatgtgagatggactgacgatctgaaatgttcagtaccttctttctaacatcatctatcacactagtaattgataattcaaatgtaacttggttattgatttttatcag
species | Oryza sativa |
transcript | LOC_Os05g46360.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTG GGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAACEST: gi|88515323|gb|CI442977.1|CI442977
genomic: GCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTGgtaattgata ... tttttatcagGGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAAC
EST: AGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTG GGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAACEST: gi|86866134|gb|CI336840.1|CI336840
genomic: AGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTGgtaattgata ... tttttatcagGGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAAC
EST: GC-GAAAGC-GAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTG GGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACAT-GTGCCAACEST: gi|58592728|gb|CF991036.1|CF991036
genomic: GCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTGgtaattgata ... tttttatcagGGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAAC
EST: GCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTG CGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAAC
genomic: GCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTGgtaattgata ... tttttatcagGGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATCAGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTGgtaattgataattccaatatatgtgagatggactgacgatctgaaatgttcagtaccttctttctaacatcatctatcacactagtaattgataattcaaatgtaacttggttattgatttttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG