1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTGATAACTACATTCACAGTTCATGATCTGGGCACTCCAGGCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAGgtacatgccatttcttttctagcttgtacaatatgctgaatctcaattttgagtcctgtataatttcctccgtgtgtttggtttcag
species | Oryza sativa |
transcript | LOC_Os05g45950.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAG GCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATGGTTGGCEST: gi|29687058|gb|CB683333.1|CB683333
genomic: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAGgtacatgcca ... ttggtttcagGCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGC
EST: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAG GCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGCEST: gi|33797474|gb|CF324597.1|CF324597
genomic: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAGgtacatgcca ... ttggtttcagGCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGC
EST: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAG GCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGCEST: gi|8956441|gb|BE230244.1|BE230244
genomic: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAGgtacatgcca ... ttggtttcagGCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGC
EST: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAG GCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGCEST: gi|8956076|gb|BE229880.1|BE229880
genomic: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAGgtacatgcca ... ttggtttcagGCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGC
EST: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAG GCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGCEST: gi|313081113|gb|HO213699.1|HO213699
genomic: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAGgtacatgcca ... ttggtttcagGCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGC
EST: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAG GCTGAAGTCCAGTEST: gi|8528059|gb|AU092874.1|AU092874
genomic: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAGgtacatgcca ... ttggtttcagGCTGAAGTCCAGT
EST: CTATCCATTCCTTTTCCCCTACCCAGAAGTCTGCCAAAG NCTGAAGTCCAGTNCTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGEST: gi|58608189|gb|CK036222.1|CK036222
genomic: CTATCCATTCCTTTT-CCCTA-CCAGAAGTCTG-CAAAGgtacatgcca ... ttggtttcagGCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGG
EST: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAG GCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGCEST: gi|38474605|gb|CF958738.1|CF958738
genomic: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAGgtacatgcca ... ttggtttcagGCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGC
EST: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAG GCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGCEST: gi|3760364|gb|C97618.1|C97618
genomic: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAGgtacatgcca ... ttggtttcagGCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGC
EST: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAG GCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGCEST: gi|33810860|gb|CF331321.1|CF331321
genomic: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAGgtacatgcca ... ttggtttcagGCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGC
EST: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAG GCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGC
genomic: GCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAGgtacatgcca ... ttggtttcagGCTGAAGTCCAGTACTTGCATCCACATGCTGGCCTGAATGCTATTGTTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGATAACTACATTCACAGTTCATGATCTGGGCACTCCAGGCCTGAAGGGAATTCTATCCATTCCTTTTCCCTACCAGAAGTCTGCAAAGgtacatgccatttcttttctagcttgtacaatatgctgaatctcaattttgagtcctgtataatttcctccgtgtgtttggtttcag
- - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG