1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCCgtaagcgcctgcccctcgtatgcttgtgtttcatatcccatgttctatatatgaaaagaagttctgacgatctgtttcttccag
species | Oryza sativa |
transcript | LOC_Os05g45310.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCC CTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTEST: gi|87018599|gb|CI252353.1|CI252353
genomic: AAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCCgtaagcgcct ... tttcttccagCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACT
EST: AAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCC CTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTEST: gi|33685592|gb|CF313831.1|CF313831
genomic: AAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCCgtaagcgcct ... tttcttccagCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACT
EST: GGGTCACCACAGCAGATGGATCC CTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTEST: gi|89162171|gb|CI103707.1|CI103707
genomic: GGGTCACCACAGCAGATGGATCCgtaagcgcct ... tttcttccagCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACT
EST: AAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCC CTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTEST: gi|88850836|gb|CI096226.1|CI096226
genomic: AAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCCgtaagcgcct ... tttcttccagCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACT
EST: GAGGGTCACCACAGCAGATGGATCC CTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTAGTEST: gi|88242714|gb|CI242563.1|CI242563
genomic: GAGGGTCACCACAGCAGATGGATCCgtaagcgcct ... tttcttccagCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACT
EST: AAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCC CTTGGATTGCTGGTTTGGTCCAAACGGCTCTTTATGCGGATTTCTTCTACTEST: gi|88241835|gb|CI241684.1|CI241684
genomic: AAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCCgtaagcgcct ... tttcttccagCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACT
EST: AAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCC CTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTEST: gi|86257989|gb|CI064342.1|CI064342
genomic: AAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCCgtaagcgcct ... tttcttccagCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACT
EST: AAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCC CTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTEST: gi|86434098|gb|CI094441.1|CI094441
genomic: AAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCCgtaagcgcct ... tttcttccagCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACT
EST: AAACTGGATTGACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCC CTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACTEST: gi|87034306|gb|CI188930.1|CI188930
genomic: AAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCCgtaagcgcct ... tttcttccagCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACT
EST: ACCACAGCAGATGGATCC CTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACT
genomic: ACCACAGCAGATGGATCCgtaagcgcct ... tttcttccagCTTGGATTGCTGGTTTGGTCCAAACAGCTCTTTATGCGGATTTCTTCTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCTACCGTGCATTTTACATCCTAAACTGGATTTACCGTTACTTCACTGAGGGTCACCACAGCAGATGGATCCgtaagcgcctgcccctcgtatgcttgtgtttcatatcccatgttctatatatgaaaagaagttctgacgatctgtttcttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA