1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTTGTCGTGGGTCTCTGGGTTCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAGgtaattattttggtacaacaactgtacaagttaccacatttagcactgttaccaactacagttttctttcttgcag
species | Oryza sativa |
transcript | LOC_Os05g45050.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAG TCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACCEST: gi|88222794|gb|CI220785.1|CI220785
genomic: TCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAGgtaattattt ... tttcttgcagTCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACC
EST: CTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAG TCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACCEST: gi|13896458|gb|AU182794.1|AU182794
genomic: CTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAGgtaattattt ... tttcttgcagTCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACC
EST: TCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAG TCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACCEST: gi|12622099|gb|AU172312.1|AU172312
genomic: TCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAGgtaattattt ... tttcttgcagTCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACC
EST: CTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAG TCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACCEST: gi|88901514|gb|CI008942.1|CI008942
genomic: CTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAGgtaattattt ... tttcttgcagTCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACC
EST: TCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAG TCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACCEST: gi|86534847|gb|CI175053.1|CI175053
genomic: TCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAGgtaattattt ... tttcttgcagTCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACC
EST: TCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCGACATAG TCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACCEST: gi|8857463|gb|AU094781.1|AU094781
genomic: TCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAGgtaattattt ... tttcttgcagTCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACC
EST: TCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAG TCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACCEST: gi|88199172|gb|CI199022.1|CI199022
genomic: TCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAGgtaattattt ... tttcttgcagTCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACC
EST: TCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAG TCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACCEST: gi|86506228|gb|CI148861.1|CI148861
genomic: TCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAGgtaattattt ... tttcttgcagTCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACC
EST: TCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAG TCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACCEST: gi|86497392|gb|CI140025.1|CI140025
genomic: TCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAGgtaattattt ... tttcttgcagTCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACC
EST: TCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAG TCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACC
genomic: TCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAGgtaattattt ... tttcttgcagTCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTCGTGGGTCTCTGGGTTCTCTCTGTTCTTGGGAGCTGCTGCAATTTCCTGACCTTGTTCTACATAGgtaattattttggtacaacaactgtacaagttaccacatttagcactgttaccaactacagttttctttcttgcag
- - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - TGCTGC