1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTATGTGCATCGCGGGATCAGTGGTGATTGTTATTCATGCTCCTCAGGAGCAAGAGATTACTTCAGTTAGAGAAATCTGGAACATGGCGATACAGCCTGgtgagaattatcgttttatcatgggtgtgattctgtttgtaagcaaagtattaattcccggtacccttaaaaaacgatttgttcttgatataaggaagtgatatctgttaattgagatgtttccatcatcctttgcag
species | Oryza sativa |
transcript | LOC_Os05g43790.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGGAACATGGCGATACAGCCTG CTTTCTTGCTATATGTTGCTTCAGTTATAGTGGTGGTCTTCGTGCTAGTGTEST: gi|33662767|gb|CF293734.1|CF293734
genomic: CTGGAACATGGCGATACAGCCTGgtgagaatta ... tcctttgcagCTTTCTTGCTATATGTTGCTTCAGTTATAGTGGTGGTCTTCGTGCTAGTGT
EST: GCAAGAGATTACTTCAGTTAGAGAAATCTGGAACATGGCGATACAGCCTG CTTTCTTGCTATATGTTGCTTCAGTTATAGTGGTGGTCTTCGTGCTAGTGT
genomic: GCAAGAGATTACTTCAGTTAGAGAAATCTGGAACATGGCGATACAGCCTGgtgagaatta ... tcctttgcagCTTTCTTGCTATATGTTGCTTCAGTTATAGTGGTGGTCTTCGTGCTAGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTATGTGCATCGCGGGATCAGTGGTGATTGTTATTCATGCTCCTCAGGAGCAAGAGATTACTTCAGTTAGAGAAATCTGGAACATGGCGATACAGCCTGgtgagaattatcgttttatcatgggtgtgattctgtttgtaagcaaagtattaattcccggtacccttaaaaaacgatttgttcttgatataaggaagtgatatctgttaattgagatgtttccatcatcctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA