1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGAAGTTAGCATTACTCCAAACCAGAATCTTATCTTATGTGGGATTGATCAAGCATGGAAAGATCCCATCACAGCAGCTCTTGCTCAATCTGGCCTGCTGgtaagatttccttcgcttatatcatatccctggtctgtaacaatgaaatatgttgccctccatgagttccctgtaatattaaatccttgtaagcttattt...
species | Oryza sativa |
transcript | LOC_Os05g42350.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGCATGGAAAGATCCCATCACAGCAGCTCTTGCTCAATCTGGCCTGCTG GAACCAAAGGATGTTGATCCCCTGAATATTACTTCCATGGCATGTCCTGCCEST: gi|66947260|gb|AU312104.1|AU312104
genomic: AAGCATGGAAAGATCCCATCACAGCAGCTCTTGCTCAATCTGGCCTGCTGgtaagatttc ... atgtatgtagGAACCAAAGGATGTTGATCCCCTGAATATTACTTCCATGGCATGTCCTGCC
EST: AAGCATGGAAAGATCCCATCACAGCAGCTCTTGCTCAATCTGGCCTGCTG GAACCAAAGGATGTTGATCCCCTGAATATTACTTCCATGGCATGTCCTGCCEST: gi|2311233|gb|C27388.1|C27388
genomic: AAGCATGGAAAGATCCCATCACAGCAGCTCTTGCTCAATCTGGCCTGCTGgtaagatttc ... atgtatgtagGAACCAAAGGATGTTGATCCCCTGAATATTACTTCCATGGCATGTCCTGCC
EST: GCATGGAAAGATCCCATCACAGCAGCTCTTTGCTCAATCTGGCCTGCTTG GAACCAA-GGATG
genomic: GCATGGAAAGATCCCATCACAGCAGCTCTT-GCTCAATCTGGCCTGCT-Ggtaagatttc ... atgtatgtagGAACCAAAGGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGTTAGCATTACTCCAAACCAGAATCTTATCTTATGTGGGATTGATCAAGCATGGAAAGATCCCATCACAGCAGCTCTTGCTCAATCTGGCCTGCTGgtaagatttccttcgcttatatcatatccctggtctgtaacaatgaaatatgttgccctccatgagttccctgtaatattaaatccttgtaagcttattt
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccctcc