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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAGCTCTGTGAAGGATAACCATGAGCATATAACTGCAATATGTGAAAGACTTGAATGGTTTGGCAGAGGCCGTGAGAATTTCCGCTTATTTGAACAGgtatataatcaagatttctagtatttatttatttatttatttatttattggtgtgtgtctttctagtctgtaaaatcggtactcattctgtccaaaactatggtacagtgctaactaaatctcatcatgacttttatag

Basic information

species Oryza sativa
transcript LOC_Os05g39230.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g39230.2 (Oryza sativa), 5'ss of exon 4
lower sequence: AC197705.4_FGT011 (Zea mays), 5'ss of exon 5
GACAAGCTCTGTGAAGGATAACCATGAGCATATAACTGCAATATGTGAAAGACTTGAATGGTTTGGCAGAGGCCGTGAGAATTTCCGCTTATTTGAACAGgtatataatcaagatttctagtatttatttatttatttatttatttattggtgtgtgtctttctagtctgtaaaatcggtactca----ttctgtccaaaactatggtacagtgctaactaaatctcatca-tgacttttatag
||| || |||||||||||||| ||||| ||||||| ||| ||||| ||||||||||| |||||||| ||||||||||| |||||||| || ||||||||||||||||| || |         || || |     || ||   ||   || |||| |||  || ||||||| | |||||| | | |    ||||| ||| ||   |  |  ||  |||||||| | || ||| |||  | | |||
GACCAGTTCTGTGAAGGATAATCATGAACATATAATTGCGATATGCGAAAGACTTGATTGGTTTGGTAGAGGCCGTGACAATTTCCGGTTGTTTGAACAGgtatataaccagg------gacatataat-----atatagccatccgttagtgtttgt--ttgtagtctgcagaatcggaatttaatctttctgcccacaagctttatgaagctctaactaattttcttcaatgatatctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58602199|gb|CK012727.1|CK012727
EST:     GACTTGAATGGTTTGGCAGAGGCCGTGAGAATTTCCGCTTATTTGAACAG                         CCTTTGGTACCTGTAGTAAATGCTAAGGATGGTAAATGGTTAACCAGCGGA
genomic: GACTTGAATGGTTTGGCAGAGGCCGTGAGAATTTCCGCTTATTTGAACAGgtatataatc ... acttttatagCCTTTGGTACCTGTAGTAAATGCTAAGGATGGTAAATGGTTAACCAGCGGA