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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTTACTTTGGTGAGTTGGAGAAGGCCCTTATCCATGGCACCAGTGCTGGTGCTGGTGTCGATCATGGCATGATCCAAAGTGACGCGTACACAGAGTgtaagactgccttttctctacacctcttatctttctctttctccaaaccttaaccacctacagaaaggttctttcttttcttcgctcccaacagcaccac...

Basic information

species Oryza sativa
transcript LOC_Os05g37170.4
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g37170.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G000842_T02 (Zea mays), 5'ss of exon 3
GCTGCTTACTTTGGTGAGTTGGAGAAGGCCCTT-ATCCATGGCACCAGTGCTGGTGCTGGTGTCGATCATGGCATGATCCAAAGTGACGCGTACACAGAGTgtaaga------ctgccttttctctacacctcttatctttctctttctccaaa-ccttaaccacctacagaa--aggttctttcttttcttcgctcccaacagcaccac
 ||  ||||||||||||||||||| |||||||| |||||||||||| || |         ||| ||||| |||||||||  |||||| | | |||||||| ||||||       |||||||| | | | |  |   ||  ||  ||  |||||| |||||||||||   ||||  || |||||||||   | |  ||    | || |   
-CTTATTACTTTGGTGAGTTGGAGGAGGCCCTTTATCCATGGCACCCGTAC------ATCTGTTGATCACGGCATGATCGGAAGTGATGTGGACACAGAGCGTAAGAgtaagattgcctttttttttctctgcacctcactcctttaatccaaaaccttaaccacccgtagaatcagcttctttcttgcttgctttctttgctgccc---