Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAATGAGATCTAGTGATACTCCCGCATCGCAACATACAGTGGTAAATGGCAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGTGCGCACTCTGAGGgtgagagagtttccttattcctttcaaaatataagacactgtatggtttttaattaaatcttacaattcccttttcttgtccag

Basic information

species Oryza sativa
transcript LOC_Os05g35274.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|313079980|gb|HO213300.1|HO213300
EST:     CAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGTGCGCACTCTGAGG                         CACCAAGTGGGATATCGAGTAGAGGATTAAGCAATGGT
genomic: CAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGTGCGCACTCTGAGGgtgagagagt ... tcttgtccagCACCAAGTGGGATATCGAGTAGAGGATTAAGCAATGGT
EST: gi|66918111|gb|CX104959.1|CX104959
EST:     CAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGTGCGCACTCTGAGG                         CACCAAGTGGGATATCGAGTAGAGGATTAAGCAATGGTACATACGAATATA
genomic: CAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGTGCGCACTCTGAGGgtgagagagt ... tcttgtccagCACCAAGTGGGATATCGAGTAGAGGATTAAGCAATGGTACATACGAATATA
EST: gi|86855040|gb|CI263107.1|CI263107
EST:     GCGCACTCTGAGG                         CACCAAGTGGGATATCGAGTAGAGGATTAAGCAATGGTACATACGAATATA
genomic: GCGCACTCTGAGGgtgagagagt ... tcttgtccagCACCAAGTGGGATATCGAGTAGAGGATTAAGCAATGGTACATACGAATATA
EST: gi|88847592|gb|CI016085.1|CI016085
EST:     TAGTGCGCACTCTGAGG                         CACCAAGTGGGATATCGAGTAGAGGATTAAGCAATGGTACATACGAATATA
genomic: TAGTGCGCACTCTGAGGgtgagagagt ... tcttgtccagCACCAAGTGGGATATCGAGTAGAGGATTAAGCAATGGTACATACGAATATA
EST: gi|86826941|gb|CI268821.1|CI268821
EST:     CAGGATTGCTGGTATTTCTCCCAACCATTCTTATAGTGCGCACTCTGAGG                         CACCAAGTGGGATATCGAGTAGAGGATTAAGCAATGGTACATACGAATATA
genomic: CAGGATTGCTGGTATTTCTCCAAACCATTCTTATAGTGCGCACTCTGAGGgtgagagagt ... tcttgtccagCACCAAGTGGGATATCGAGTAGAGGATTAAGCAATGGTACATACGAATATA