1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGTCTGCTACAAAAGTGACATTTCCACTTGTCTGGACAAACACTTGCTGTAGCCACCCTCTATACCGCGAGTCCGAGCTCATTGAAGATAAAAGCCTAGgtacatctatctacctgccctgaaatgagaactgtgaaaaacaaagccatacctatctttgcactgtctatgctgctctccaccttactaaataatacaagttgctacgttgtatttcag
species | Oryza sativa |
transcript | LOC_Os05g34180.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCCACCCTCTAATACCGCGAGTCCGAGCTCCATTGAAGATAAAACCCTAG GGGTCAGAAATNCAGCACAGCGGAAGCTATTCGATGAACTGGGAATNCAAGEST: gi|86524308|gb|CI164514.1|CI164514
genomic: -CCACCCTCT-ATACCGCGAGTCCGAGCT-CATTGAAGATAAAAGCCTAGgtacatctat ... tgtatttcagGGGTCAGAAATGCAGCACAGCGGAAGCTATTCGATGAACTGGGAATACAAG
EST: TAGCCACCCTCTATACCGCGAGTCCGAGCTCATTGAAGATAAAAGCCTAG GGGTCAGAAATGCAGCACAGCGGAAGCTATTCGATGAACTGGGAATACAAGEST: gi|87012425|gb|CI280329.1|CI280329
genomic: TAGCCACCCTCTATACCGCGAGTCCGAGCTCATTGAAGATAAAAGCCTAGgtacatctat ... tgtatttcagGGGTCAGAAATGCAGCACAGCGGAAGCTATTCGATGAACTGGGAATACAAG
EST: GCGAGTCCGAGCTCATTGAAGATAAAAGCCTAG GGGTCAGAAATGCAGCACAGCGGAAGCTATTCGATGAACTGGGAATACAAGEST: gi|86596305|gb|CI268605.1|CI268605
genomic: GCGAGTCCGAGCTCATTGAAGATAAAAGCCTAGgtacatctat ... tgtatttcagGGGTCAGAAATGCAGCACAGCGGAAGCTATTCGATGAACTGGGAATACAAG
EST: TAGCCACCCTCTATACCGCGAGTCCGAGCTCATTGAAGAT-AAAGCCTAG GGGTCAGAAATGCAGCACAGCGGAAGCTATTCGATGAACTGGGAATACAAGEST: gi|88847873|gb|CI006059.1|CI006059
genomic: TAGCCACCCTCTATACCGCGAGTCCGAGCTCATTGAAGATAAAAGCCTAGgtacatctat ... tgtatttcagGGGTCAGAAATGCAGCACAGCGGAAGCTATTCGATGAACTGGGAATACAAG
EST: TAGCCACCCTCTATACCGCGAGTCCGAGCTCATTGAAGATAAAAGCCTAG GGGTCAGAAATGCAGCACAGCGGAAGCTATTCGATGAACTGGGAATACAAGEST: gi|86855536|gb|CI267065.1|CI267065
genomic: TAGCCACCCTCTATACCGCGAGTCCGAGCTCATTGAAGATAAAAGCCTAGgtacatctat ... tgtatttcagGGGTCAGAAATGCAGCACAGCGGAAGCTATTCGATGAACTGGGAATACAAG
EST: TAGCCACCCTCTATACCGCGAGTCCGAGCTCATTGAAGAT-AAAGCCTAG GGGTCAGAAATGCAGCACAGCGGAAGCTATTCGATGAACTGGGAATACAAG
genomic: TAGCCACCCTCTATACCGCGAGTCCGAGCTCATTGAAGATAAAAGCCTAGgtacatctat ... tgtatttcagGGGTCAGAAATGCAGCACAGCGGAAGCTATTCGATGAACTGGGAATACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTCTGCTACAAAAGTGACATTTCCACTTGTCTGGACAAACACTTGCTGTAGCCACCCTCTATACCGCGAGTCCGAGCTCATTGAAGATAAAAGCCTAGgtacatctatctacctgccctgaaatgagaactgtgaaaaacaaagccatacctatctttgcactgtctatgctgctctccaccttactaaataatacaagttgctacgttgtatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA