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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTATGAGGGGCATGGCAAGTCCATGGGTGCCAGATGCTACATCCAGAAGTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTGgtaaagaaaaaaaaaacctcttctgatcttcatctgtttctactccattttgcctctgaacttttaccatcacaagtaaattaccagtagtcactggaaa...

Basic information

species Oryza sativa
transcript LOC_Os05g29974.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g29974.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G306851_T02 (Zea mays), 5'ss of exon 4
GATTATGAGGGGCATGGCAAGTCCATGGGTGCCAGATGCTACATCCAGAAGTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTGgtaaagaaaaaaaaaacctcttctgatcttcatctgtttctactccattttg-cctctgaacttttaccatcacaagtaaattaccagtagtcactggaaa
||||||||||| || |||||||||||||||||||| ||||||||||| ||||| |||   || || |  ||||||||||  |||||||| || || |||||||   ||| |       || |  ||  ||  |  ||         |    | |||   ||  ||||   |     | || |   | | ||          
GATTATGAGGGCCACGGCAAGTCCATGGGTGCCAGGTGCTACATCCACAAGTTTGAGAGCCTCGTGGCCGACTGCGACATGTTCTTCAAGTCCATCTGTGgtacgtaaacatc--ttttccttggaaattactgggtaaaagtgttaccaggacctgaaaaagtttatagtagtttg-aactcttctgcag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88356078|gb|CI627526.1|CI627526
EST:     GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTG                         AGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGG
genomic: GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTGgtaaagaaaa ... cttttttcagAGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGG
EST: gi|88416988|gb|CI573703.1|CI573703
EST:     GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTG                         AGCTGGAGGAGTA--GAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGG
genomic: GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTGgtaaagaaaa ... cttttttcagAGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGG
EST: gi|58609664|gb|CK037697.1|CK037697
EST:     CTTCAAATC-ATATGTG                         AGCTGGGGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGG
genomic: CTTCAAATCAATATGTGgtaaagaaaa ... cttttttcagAGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGG
EST: gi|88760430|gb|CI769986.1|CI769986
EST:     GTTCGAGCATCTTGTCGATAACTGCGACAGATTCTTCAAATCAATATGTG                         AGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACG
genomic: GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTGgtaaagaaaa ... cttttttcagAGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACG
EST: gi|29656345|gb|CB652620.1|CB652620
EST:     GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTG                         AGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGG
genomic: GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTGgtaaagaaaa ... cttttttcagAGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGG
EST: gi|88743266|gb|CI766774.1|CI766774
EST:     GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTG                         AGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGG
genomic: GTTCGAGCATCTTGTCGATGACTGCGACAGATTCTTCAAATCAATATGTGgtaaagaaaa ... cttttttcagAGCTGGAGGAGTACAGAGACAAGAGCCGGTTCCTGTACGGGGAGTCGATGG