1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TACATCATTCCAAACTCTTCTGGACAACATTTTCCTTCCTCTGTTTGAGGTCACCATTGATCCAGCTTCTCATCCGCAGCTTCACGTCTTCCTAAAGCAGgttcaatagttttctcactattttgtgatttgcataactgttgtttgtattgatgctgtgcattttgtctcagaattaacacatatgtagtaaagattaa...
species | Oryza sativa |
transcript | LOC_Os05g28180.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCACCATTGATCCAGCTTCTCATCCGCAGCTTCACGTCTTCCTAAAGCAG GTTGTAGGGTTAGATTTGGTTGATGATGAGAGTAAACCTGAAAGGCGTCCAEST: gi|88693457|gb|CI737032.1|CI737032
genomic: TCACCATTGATCCAGCTTCTCATCCGCAGCTTCACGTCTTCCTAAAGCAGgttcaatagt ... ggccttgcagGTTGTAGGGTTAGATTTGGTTGATGATGAGAGTAAACCTGAAAGGCGTCCA
EST: TCACCATTGATCCAGCTTCTCATCCGCAGCTTCACGTCTTCCTAAAGCAG GTTGTAGGGTTAGATTTGGTTGATGATGAGAGTAAACCTGAAAGGCGTCCAEST: gi|58687285|gb|CK075972.1|CK075972
genomic: TCACCATTGATCCAGCTTCTCATCCGCAGCTTCACGTCTTCCTAAAGCAGgttcaatagt ... ggccttgcagGTTGTAGGGTTAGATTTGGTTGATGATGAGAGTAAACCTGAAAGGCGTCCA
EST: TCACCATTGATCCAGCTTCTCATCCGCAGCTTCACGTCTTCCTAAAGCAG GTTGTAGGGTTAGATTTGGTTGATGATGAGAGTAAACCTGAAAGGCGTCCAEST: gi|58610210|gb|CK038109.1|CK038109
genomic: TCACCATTGATCCAGCTTCTCATCCGCAGCTTCACGTCTTCCTAAAGCAGgttcaatagt ... ggccttgcagGTTGTAGGGTTAGATTTGGTTGATGATGAGAGTAAACCTGAAAGGCGTCCA
EST: TCACCATTGATCCAGCTTCTCATCCGCAGCTTCACGTCTTCCTAAAGCAG GTTGTAGGGTTA
genomic: TCACCATTGATCCAGCTTCTCATCCGCAGCTTCACGTCTTCCTAAAGCAGgttcaatagt ... ggccttgcagGTTGTAGGGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACATCATTCCAAACTCTTCTGGACAACATTTTCCTTCCTCTGTTTGAGGTCACCATTGATCCAGCTTCTCATCCGCAGCTTCACGTCTTCCTAAAGCAGgttcaatagttttctcactattttgtgatttgcataactgttgtttgtattgatgctgtgcattttgtctcagaattaacacatatgtagtaaagattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT