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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGAACTTGTTCACCGAGTTGAGAAGGATCTCATTAGTATTATGCATGGGGTATCTATCAgtatccttttggtttttgttgcttgcttatgttccactcacatgttgccttaattacaattgactcaacatcattttcatcatagtttgttccgttgaaa...

Basic information

species Oryza sativa
transcript LOC_Os05g28010.2
intron # 4
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g28010.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G147614_T03 (Zea mays), 5'ss of exon 3
GCCGAACTTGTTCACCGAGTTGAGAAGGATCTCATTAGTATTATGCATGGGGTATCTATCAgtatccttttggtttttgttgcttgcttatgttccactcacatgttgccttaattacaattgactcaacatcattttcatcatagtttgttccgttgaaa--
|| || || ||| ||| |||||||||| |||| || ||||| |||||||| |||||| |||||||||||||| ||||  | || |||   |     | |   |   ||  ||   | | |    ||    |  | |   || |||||    |   ||   |  
GCAGAGCTGGTTAACCAAGTTGAGAAGCATCTTATCAGTATCATGCATGGAGTATCTGTCAgtatccttttg-ttttcttcgcctgccacttgctaaatggtagcatgtgttgtattctagcagctgggaaaaaatggtat-atagtactcttttttactatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86536687|gb|CI176893.1|CI176893
EST:     AGAAGGATCTCATTAGTATTATGCATGGGGTATCTATCA                         ACCAGAATGCCAGTGCAATTCTAAGGGCAGGAGAAGGTGGCGATCGTAAGA
genomic: AGAAGGATCTCATTAGTATTATGCATGGGGTATCTATCAgtatcctttt ... cggttgatagACCAGAATGCCAGTGCAATTCTAAGGGCAGGAGAAGGTGGCGATCGTAAGA
EST: gi|88223765|gb|CI223614.1|CI223614
EST:     TCACCGAGTTGAGAAGGATCTCATTAGTATTATGCATGGGGTATCTATCA                         ACCAGAATGCCAGTGCAATTCTAAGGGCAGGAGAAGGTGGCGATCGTAAGA
genomic: TCACCGAGTTGAGAAGGATCTCATTAGTATTATGCATGGGGTATCTATCAgtatcctttt ... cggttgatagACCAGAATGCCAGTGCAATTCTAAGGGCAGGAGAAGGTGGCGATCGTAAGA
EST: gi|88977292|gb|CI025029.1|CI025029
EST:     TCACCGAGTTGAGAAGGATCTCATTAGTATTATGCATGGGGTATCTATCA                         ACCAGAATGCCAGTGCAATTCTAAGGGCAGGAGAAGGTGGCGATCGTAAGA
genomic: TCACCGAGTTGAGAAGGATCTCATTAGTATTATGCATGGGGTATCTATCAgtatcctttt ... cggttgatagACCAGAATGCCAGTGCAATTCTAAGGGCAGGAGAAGGTGGCGATCGTAAGA