1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGTTGGAACACATGACTTTACATCTTTCGCTAATGCAGTACACAATGATCGTGTACGCAGTCCCATAAAGAAGATAATGCGCTTTGATGTTATTGAAATGgtaattgaagctcgcagttcttagttttgccttttcaccctgacaatgcagcattaaggccctctttgtttaggcttataagccaacttataagccgaaa...
species | Oryza sativa |
transcript | LOC_Os05g19954.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTGTACCCAGTCCCATAAAGAAGATAATGCGCTTTGATGTTATTGAAATG GGTGCTATCTTACAGCTTGAGATTGAAGGCACTGGCTTTCTGTACAGACAAEST: gi|88374762|gb|CI518629.1|CI518629
genomic: GTGTACGCAGTCCCATAAAGAAGATAATGCGCTTTGATGTTATTGAAATGgtaattgaag ... tgccacacagGGTGCTATCTTACAGCTTGAGATTGAAGGCACTGGCTTTCTGTACAGACAA
EST: GTTATTGAAATG GGTGCTATCTTACAGCTTGAGATTGAAGGCACTGGCTTTCTGTACAGACAAEST: gi|87019504|gb|CI282005.1|CI282005
genomic: GTTATTGAAATGgtaattgaag ... tgccacacagGGTGCTATCTTACAGCTTGAGATTGAAGGCACTGGCTTTCTGTACAGACAA
EST: GTGTACGCAGTCCCATAAAGAAGATAATGCGCTTTGATGTTATTGAAATG GGTGCTATCTTACAGCTTGAGATTGAAGGCACTGGCTTTCTGTACAGACAA
genomic: GTGTACGCAGTCCCATAAAGAAGATAATGCGCTTTGATGTTATTGAAATGgtaattgaag ... tgccacacagGGTGCTATCTTACAGCTTGAGATTGAAGGCACTGGCTTTCTGTACAGACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGGAACACATGACTTTACATCTTTCGCTAATGCAGTACACAATGATCGTGTACGCAGTCCCATAAAGAAGATAATGCGCTTTGATGTTATTGAAATGgtaattgaagctcgcagttcttagttttgccttttcaccctgacaatgcagcattaaggccctctttgtttaggcttataagccaacttataagccgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG