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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTCTAAGCGGCATTCATGGTGTACCAAGAGTACATTATAAAGGGAGGCAGGGGGATTACTATATCATGgtaacggagcatatactcttggccccactttatgtgttatatactccctccatcccaaattgatcatcatatatgtttatgcaccaagaccaaggataat...

Basic information

species Oryza sativa
transcript LOC_Os05g11140.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g11140.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G116151_T03 (Zea mays), 5'ss of exon 4
CACTCTAAGCGGCATTCATGGTGTACCAAGAGTACATTATAAAGGGAGGCAGGGGGATTACTATATCATGgtaacggagcatatactcttggccccactttatgtgt-tatatactccctccatcccaaattgatcatcatatatgtttatgcaccaagaccaag-gataat---
|||||| ||||| |||||||| |||||||||||||| || ||||||| || ||| || || ||||||||||||   ||||| | | |  ||     |  ||   |||  | | ||   |  |  |     ||  |  |   | | |      |  |  | | |||  || ||   
CACTCTTAGCGGAATTCATGGCGTACCAAGAGTACACTACAAAGGGAAGCTGGGAGAGTATTATATCATGgta-ttgagcagacaatactg-ttgtatattgactgtgcacacacatgccactacttttttttttggtttcacacg---gcacctcttgtctaagtaattatctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29681938|gb|CB678213.1|CB678213
EST:     GTGTACCAAGAGTACATTATAAAGGGAGGCAGGGGGATTACTATATCATG                         ATTATGGACATGTTGGGTCCAAGCCTGTGGGATGTTTGGAATAATAATTCC
genomic: GTGTACCAAGAGTACATTATAAAGGGAGGCAGGGGGATTACTATATCATGgtaacggagc ... ttatatgcagATTATGGACATGTTGGGTCCAAGCCTGTGGGATGTTTGGAATAATAATTCC