1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTAGGTGAAGATGTGGTGGCCGAATTGCAGATGGCCATGGAGAAGCAAGGTCTGGACATGCGCGTTTCCGCATTGgttagttctgaaatgatcagttccatatcatttttgaacaaagcgaaatttgttcttatgataagcttgacattattttttgactgtttcag
species | Oryza sativa |
transcript | LOC_Os05g09500.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCCATGGAGAAGCAAGGTCTGGACATGCGCGTTTCCGCATTG ATCAATGACACTGTTGGGACATTGGCGGCAGGCAGCTACTACGACGAAGATEST: gi|29672516|gb|CB668791.1|CB668791
genomic: GCCATGGAGAAGCAAGGTCTGGACATGCGCGTTTCCGCATTGgttagttctg ... actgtttcagATCAATGACACTGTTGGGACATTGGCGGCAGGCAGCTACTACGACGAAGAT
EST: TGCAGATGGCCATGGAGAAGCAAGGTCTGGACATGCGCGTTTCCGCATTG ATCAATGACACTGTTGGGACATTGGCGGCAGGCAGCTACTACGACGAAGATEST: gi|29672557|gb|CB668832.1|CB668832
genomic: TGCAGATGGCCATGGAGAAGCAAGGTCTGGACATGCGCGTTTCCGCATTGgttagttctg ... actgtttcagATCAATGACACTGTTGGGACATTGGCGGCAGGCAGCTACTACGACGAAGAT
EST: TGCAGATGGCCATGGAGAAGCAAGGTCTGGACATGCGCGTTTCCGCATTG ATCAATGACACTGTTGGGACATTGGCGGCATGCAGCTACTACGACGAAGAT
genomic: TGCAGATGGCCATGGAGAAGCAAGGTCTGGACATGCGCGTTTCCGCATTGgttagttctg ... actgtttcagATCAATGACACTGTTGGGACATTGGCGGCAGGCAGCTACTACGACGAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGGTGAAGATGTGGTGGCCGAATTGCAGATGGCCATGGAGAAGCAAGGTCTGGACATGCGCGTTTCCGCATTGgttagttctgaaatgatcagttccatatcatttttgaacaaagcgaaatttgttcttatgataagcttgacattattttttgactgtttcag
- - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - AGCAAG