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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATTTAGCTCCTGGCAGCAAGTTCGATTTCCAGAAGTACATCAAACGGTCTCTCGAGGACGATTTCAAGGTCATTGTCGGAATCAGgtgtgctgctaaatgctaatcacattctcatcttgcaatctgtcaatttttttcttggtactgaaccatcacgaattaagtatattcttgttggtctgaatgtttattgcag

Basic information

species Oryza sativa
transcript LOC_Os05g09050.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g09050.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT2G17430.1 (Arabidopsis thaliana), 5'ss of exon 7
GTTCATTTAGCTCCTGGCAGCAAGTTCGATTTCCAGAAGTACATCAAACGGTCTCTCGAGGACGATTTCAAGGTCATTGTCGGAATCAGgtgtgctgctaaatgctaatcacattctcatcttgcaatctgtcaatttttttcttggtactgaaccatcacgaattaagtatattcttgttggtctgaatgtttattgcag
|  ||||||||||| || || |||||| | |||||||  || |||||| | ||||||||||| ||||||||| |  | || ||||| |||| | |  |  ||| | |||||     |     || || | |||  |   |     |||  |     || ||   || |  | ||| || ||| |||| |            
GCCCATTTAGCTCCAGGAAGAAAGTTCAACTTCCAGAGATATATCAAAAGATCTCTCGAGGATGATTTCAAGTTGGTAGTTGGAATAAGgt-tacaacacaat-caaatcatcaaatgcaaatgaaaccggtct-tacataatccggtcgta---tataacagttttaacaaattgtt-ttgctctgcag-----------

upper sequence: LOC_Os05g09050.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT5G65970.1 (Arabidopsis thaliana), 5'ss of exon 8
GTTCATTTAGCTCCTGGCAGCAAGTTCGATTTCCAGAAGTACATCAAACGGTCTCTCGAGGACGATTTCAAGGTCATTGTCGGAATCAGgtgtgctgctaaatgctaatcacattctcatcttgcaatctgtcaatttttttcttggtactgaaccatcacgaattaagtatattcttgttggtctgaatgtttattgcag
|  ||||||||||| || || |||||||| ||||||||||| |||||| | ||  | || ||||||||||||||  | || ||||| ||||  |  ||  ||  |    |     ||  |  |||  |  |     ||| ||     | ||||  |   ||     |                                  
GCCCATTTAGCTCCAGGAAGAAAGTTCGACTTCCAGAAGTATATCAAAAGATCATTGGAAGACGATTTCAAGGTGGTAGTTGGAATAAGgtacgtagcacaaaacagtgctagagctagtactgcgttgagaggtgtttgttgacattgctgatactgtactgtgcag---------------------------------