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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGAAGGTGGCGTCGCCGGCGGAGTTCAGCCTCTCCCAGATCTGGCTCATCTCCGGCTCCTTCGGCAATGACCTCAACACCATCGAGGCCGGATGGCAGgtgctacattttcttttctttctctcctccttttctgaaacttgttcagtcaatcaggcctagctagctagtagccagtttcagagattacattttactc...

Basic information

species Oryza sativa
transcript LOC_Os05g07764.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g07764.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G131650_T04 (Zea mays), 5'ss of exon 4
GGCGAAGGTGGCGTCGCCGGCG--GAGTTCAGCCTCTCCCAGATC---TGGC---TCATCTC-CGGCTCCTT--CGGCAATGACCTCAACACCATCGAG-GCCGGATGGCAGgtgctacattttcttttctttctctcctccttttctgaaacttgttcagtcaatcaggcctagctagctagtagccagtttcagagattacattttactc
         |||| |  ||||   ||  ||| |  |  | ||  |   ||||   ||| | | | |||      || |||   || ||    | ||     | |||  | | | ||  |    ||  |  |  |||  | || ||| |       |  || ||||||| |  ||   |  | | | |      |||                
--------CGGCGCCTTCGGCAACGACCTCAACACCATCGAGGCCGGCTGGCAGGTCAGCCCTCAGCTGTACGGCGACAACAGCCCCAGGTTCTTCACCTACTGGACAgtaagagcagctccctcgatcatccctcgtcaccattttt----tccggcca-tcaatcaag--taaaaaaatggaaacgcaacgcag----------------

upper sequence: LOC_Os05g07764.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G131650_T03 (Zea mays), 5'ss of exon 4
GGCGAAGGTGGCGTCGCCGGCGGAGTTCAGCCTCTCCCAGATCTGGCTCATCTCCGGCTCCTTCGGCAATGACCTCAACACCATCGAGGCCGGATGGCAGgtgctacattttcttttctttctct----cctccttttctgaaact--tgttcagtca-atcaggcctagctagc-----tagtagccagtttcagagatta-cattttactc----------------------
                                   | ||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||    | |   || | |     |     || |   ||||  | ||  ||  |||| | | |||  |   | | |     | ||  ||| |||    |   | || |  | |                       
-----------------------------------CGCAGATCTGGGTCATCTCCGGCGCCTTCGGCAACGACCTCAACACCATCGAGGCCGGCTGGCAGGTCAGCCCTCAGCTGTACGGCGACAACAGCCCCAGgttcttcacctactggacagtaagagcagctccctcgatcatccctcgtcaccattttttccggccatcaatcaagtaaaaaaatggaaacgcaacgcag