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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTGTGGACCATGTCGTGTTATTGCACCTATTTATGCTGAGATGTCAAAGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaaccgtttgtttggtcaaatttgctattgaaaaatgattaatttcagttttgtatgaaccaagaaaccccttatacatctgatggcggtcat...

Basic information

species Oryza sativa
transcript LOC_Os05g07690.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g07690.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G066612_T01 (Zea mays), 5'ss of exon 2
CTGGTGTGGACCATGTCGTGTTATTGCACCTATTTATGCTGAGATGTCAAAGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaaccgtttgtttggtcaaatttgctattgaaaa-atgattaatttcagttttgtatgaaccaagaaaccccttatacatctgatggcggtc-at
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CTGGTGTGGGCCATGCCGTGTCATTGCTCCTGTCTATGCTGAAATGTCAAAGACTTATCCTCAACTCATGTTCTTGACAATAGACGTTGATGACCTGATGgta-tttcaatcttacatgtg-ccaaattagtttttggaattatgcatggcttcgacttagggcatgtttggaagtacctagtttttaagaaactggtttat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38473602|gb|CF957734.1|CF957734
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|88691222|gb|CI735301.1|CI735301
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|88688210|gb|CI731786.1|CI731786
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|58596706|gb|CK007234.1|CK007234
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|88844283|gb|CI005656.1|CI005656
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|88263215|gb|CI366989.1|CI366989
EST:     TCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: TCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|88237719|gb|CI237568.1|CI237568
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCGTCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|218480992|gb|FG958013.1|FG958013
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|88957526|gb|CI011455.1|CI011455
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|88847816|gb|CI006002.1|CI006002
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|86527391|gb|CI167597.1|CI167597
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|88693751|gb|CI735404.1|CI735404
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|89199020|gb|CI253094.1|CI253094
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|88469849|gb|CI407120.1|CI407120
EST:     TAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: TAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|58683882|gb|CK072569.1|CK072569
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|88836925|gb|CI008361.1|CI008361
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|33661687|gb|CF292654.1|CF292654
EST:     AGACTTATCCTCAACTCATGTTCTTGTCAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|88205100|gb|CI204949.1|CI204949
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|33821282|gb|CF336453.1|CF336453
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|88321921|gb|CI673069.1|CI673069
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACC
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACC
EST: gi|88689728|gb|CI733304.1|CI733304
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|38480845|gb|CF964934.1|CF964934
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|86593727|gb|CI266407.1|CI266407
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|87028600|gb|CI265999.1|CI265999
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|88691439|gb|CI733517.1|CI733517
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|89186360|gb|CI262192.1|CI262192
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
EST: gi|33814147|gb|CF332955.1|CF332955
EST:     AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATG                         GATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA
genomic: AGACTTATCCTCAACTCATGTTCTTGACAATAGATGTTGATGACCTAATGgtaattctaa ... ttctctgcagGATTTCAGCTCATCATGGGATATCCGCGCAACGCCGACCTTTTTCTTCATA