1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGGCAGTGGTAGTGCAAGGAGTAGAAGGATGAGGGATTCCTATCATGGTTTTCATCATTTGATGATTGAAGACAATAACTTGGGAAGATCAGCAGCTGAGgtagatattattctctcctcttgatatcagtacaatgttaaaattttgaacacgcatctaatctattttcactctttgtag
species | Oryza sativa |
transcript | LOC_Os05g07070.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCATCATTTGATGATTGAAGACAATAACTTGGGAAGATCAGCAGCTGAG CGGTTTATGATGCTGGATCAGTTAGTTATCCATGAATCATGAGAAGCATTCEST: gi|29615678|gb|CB620690.1|CB620690
genomic: TTCATCATTTGATGATTGAAGACAATAACTTGGGAAGATCAGCAGCTGAGgtagatatta ... ctctttgtagCGGTTTATGATGCTGGATCAGTTAGTTATCCATGAATCAAGAGAAGCATTC
EST: TTCATCATTTGATGATTGAAGACAATAACTTGGGAAGATCAGCAGCTGAG CGGTTTATGATGCTGGATCAGTTAGTTATCCATGAATCAAGAGAAGCATTCEST: gi|66914386|gb|CX101234.1|CX101234
genomic: TTCATCATTTGATGATTGAAGACAATAACTTGGGAAGATCAGCAGCTGAGgtagatatta ... ctctttgtagCGGTTTATGATGCTGGATCAGTTAGTTATCCATGAATCAAGAGAAGCATTC
EST: TTCATCATTTGATGATTGAAGACAATAACTTGGGAAGATCAGCAGCTGAG CGGTTTATGATGCTGGATCAGTTAGTTATCCATGAATCAAGAGAAGCATTCEST: gi|44665886|gb|CR279320.1|CR279320
genomic: TTCATCATTTGATGATTGAAGACAATAACTTGGGAAGATCAGCAGCTGAGgtagatatta ... ctctttgtagCGGTTTATGATGCTGGATCAGTTAGTTATCCATGAATCAAGAGAAGCATTC
EST: TTCATCATTTGATGATTGAAGACAATAACTTGGGAAGATCAGCAGCTGAG CGGTTTATGATGCTGGATCAGTTAGTTATCCATGAATCAAGAGAAGCATTC
genomic: TTCATCATTTGATGATTGAAGACAATAACTTGGGAAGATCAGCAGCTGAGgtagatatta ... ctctttgtagCGGTTTATGATGCTGGATCAGTTAGTTATCCATGAATCAAGAGAAGCATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCAGTGGTAGTGCAAGGAGTAGAAGGATGAGGGATTCCTATCATGGTTTTCATCATTTGATGATTGAAGACAATAACTTGGGAAGATCAGCAGCTGAGgtagatattattctctcctcttgatatcagtacaatgttaaaattttgaacacgcatctaatctattttcactctttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA