1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATCAGGCACATCAGATAACACCAAAGTGGTAGTTGAGTCTGGTGCTGTGCCCATCTTTGTCAAACTGCTTAGCTCCCCCAGTGAGGATGTCCGTGAGCAGgtatgtcaacagttaacagaagaattataatttccctgagggacctgtactgcatgatgtttagattgttacatttctctctctttttttttaaatcttcgcag
species | Oryza sativa |
transcript | LOC_Os05g06350.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCATCTTTGTCAAACTGCTTAGCTCCCCCAGTGAGGATGTCCGTGAGCAG GCTGTATGGGCTCTGGGAAATGTGGCTGGTGACTCACCAAAATGCCGTGACEST: gi|218480261|gb|FG945872.1|FG945872
genomic: CCATCTTTGTCAAACTGCTTAGCTCCCCCAGTGAGGATGTCCGTGAGCAGgtatgtcaac ... atcttcgcagGCTGTATGGGCTCTGGGAAATGTGGCTGGTGACTCACCAAAATGCCGTGAC
EST: CCATCTTTGTCAAACTGCTTAGCTCCCCCAGTGAGGATGTCCGTGAGCAG GCTGTATGGGCTCTGGGAAATGTGGCTGGTGACTCACCAAAATGCCGTGACEST: gi|33793316|gb|CF322538.1|CF322538
genomic: CCATCTTTGTCAAACTGCTTAGCTCCCCCAGTGAGGATGTCCGTGAGCAGgtatgtcaac ... atcttcgcagGCTGTATGGGCTCTGGGAAATGTGGCTGGTGACTCACCAAAATGCCGTGAC
EST: CCATCTTTGTCAAACTGCTTAGCTCCCCCAGTGAGGATGTCCGTGAGCAG GCTGTATGGGCTCTGGGAAATGTEST: gi|33797470|gb|CF324595.1|CF324595
genomic: CCATCTTTGTCAAACTGCTTAGCTCCCCCAGTGAGGATGTCCGTGAGCAGgtatgtcaac ... atcttcgcagGCTGTATGGGCTCTGGGAAATGT
EST: CCATCTTTGTCAAACTGCTTAGCTCCCCCAGTGAGGATGTCCGTGAGCAG GCTGTATGGGCTCTGGGAAATGTGGCTGGTGACTCACCAAAATGCCGTGACEST: gi|58664150|gb|CK052836.1|CK052836
genomic: CCATCTTTGTCAAACTGCTTAGCTCCCCCAGTGAGGATGTCCGTGAGCAGgtatgtcaac ... atcttcgcagGCTGTATGGGCTCTGGGAAATGTGGCTGGTGACTCACCAAAATGCCGTGAC
EST: CCATCTTTGTCAAACTGCTTAGCTCCCCCAGTGAGGATGTCCGTGAGCAG GCTGTATGGGCTCTGGGAAATGTGGCTGGTGACTCACCAAAATGCCGTGACEST: gi|58653933|gb|CK042613.1|CK042613
genomic: CCATCTTTGTCAAACTGCTTAGCTCCCCCAGTGAGGATGTCCGTGAGCAGgtatgtcaac ... atcttcgcagGCTGTATGGGCTCTGGGAAATGTGGCTGGTGACTCACCAAAATGCCGTGAC
EST: CCATCTTTGTCAAACTGCTTAGCTCCCCCAGTGAGGATGTCCGTGAGCAG GCTGTATGGGCTCTGGGAAATGTGGCTGGTGACTCACCAAAATGCCGTGAC
genomic: CCATCTTTGTCAAACTGCTTAGCTCCCCCAGTGAGGATGTCCGTGAGCAGgtatgtcaac ... atcttcgcagGCTGTATGGGCTCTGGGAAATGTGGCTGGTGACTCACCAAAATGCCGTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAGGCACATCAGATAACACCAAAGTGGTAGTTGAGTCTGGTGCTGTGCCCATCTTTGTCAAACTGCTTAGCTCCCCCAGTGAGGATGTCCGTGAGCAGgtatgtcaacagttaacagaagaattataatttccctgagggacctgtactgcatgatgtttagattgttacatttctctctctttttttttaaatcttcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG