1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGgtatataacatgtgcaaagtctttctttcttctaatttattcatctttatgtgtgcgtgttcatatgtatgcatgcatgagcacatcatatgcactgtttacaagctcagaatactttaatgttctttgaattcgcag
species | Oryza sativa |
transcript | LOC_Os05g01970.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTG GTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATEST: gi|29637203|gb|CB642212.1|CB642212
genomic: GCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGgtatataaca ... gaattcgcagGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATAT
EST: GCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTG GTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATEST: gi|27577865|gb|CB000560.1|CB000560
genomic: GCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGgtatataaca ... gaattcgcagGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATAT
EST: GCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTG GTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATEST: gi|29614613|gb|CB619626.1|CB619626
genomic: GCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGgtatataaca ... gaattcgcagGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATAT
EST: GCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTG GTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATATEST: gi|29637365|gb|CB642374.1|CB642374
genomic: GCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGgtatataaca ... gaattcgcagGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATAT
EST: GCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTG GTTTGGAAGAGGAAGGCGGAGCAGTACCTAACAGACTCAAGTCTACCATATEST: gi|27578266|gb|CB000961.1|CB000961
genomic: GCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGgtatataaca ... gaattcgcagGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATAT
EST: GCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTG GTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATAT
genomic: GCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGgtatataaca ... gaattcgcagGTTTGGAAGAGGAAGGCGGAGCAGTACCTAGCAGACTCAGGTCTACCATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTGgtatataacatgtgcaaagtctttctttcttctaatttattcatctttatgtgtgcgtgttcatatgtatgcatgcatgagcacatcatatgcactgtttacaagctcagaatactttaatgttctttgaattcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG