Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTCTGGAGTGCTTGCATTTTGCCTAAACTTCTCCATTTTCTACGTGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccatttggcctatgctttgttcttttcatatattctgctcgatcatttcttagaactgatcattgcgctgcag

Basic information

species Oryza sativa
transcript LOC_Os04g59550.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g59550.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G127591_T03 (Zea mays), 5'ss of exon 5
---AGGCTCTGGAGTGCTTGCATTTTGCCTAAACTTCTCCATTTTCTACGTGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccatttggcctatgctttgttcttttcatatattctgctcgatcatttcttagaactgatcattgcgctgcag
   ||| || || |||||||| || ||||| ||||||||||| |||||||| ||||||||||| || |||||||| ||||| ||||| |||||||| ||||||          |  |  | |  |  ||  | |     | |||||||| ||||  ||   |  |    ||    || ||
CCTAGGTTCGGGGGTGCTTGCGTTCTGCCTTAACTTCTCCATCTTCTACGTCATCCATTCAACAACAGCAGTGACGTTCAACGTTGCAGGCAACCTTAAAgtaa---------gatccctaccctactccctccgc---tgctgctcga-cattgattgacatagcatcttaaaatgtag

upper sequence: LOC_Os04g59550.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA14G23570.1 (Glycine max), 5'ss of exon 4
---AGGCTCTGGAGTGCTTGCATTTTGCCTAAACTTCTCCATTTTCTACGTGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccatttggcctatgctt-tgttcttttcatatattctgctcgatcattt-cttagaactgatcattgcgctg-cag-----------------
     ||||||||||  | || || ||||| |||||||||||||| || ||||| ||||| |||||||| || || || ||||||||||| ||||| || ||     | ||  |||  |  |   || |     |   ||   |  | | || |    || |   | || |||  | |  |||                 
TTTCAGCTCTGGAGTTTTGGCGTTCTGCCTTAACTTCTCCATTTTTTATGTGATTCATTCCACCACTGCTGTAACATTTAATGTTGCTGGAAACCTTAAGgtgagttctatcaggcagaatcaaatgcttcaagctactacattatttggtcttaaattttgggttcatgattttgttttcagttggttcattcatgtat

upper sequence: LOC_Os04g59550.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA13G03210.1 (Glycine max), 5'ss of exon 5
---AGGCTCTGGAGTGCTTGCATTTTGCCTAAACTTCTCCATTTTCTACGTGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccatttggccta--tgctttgttcttttcatatattctgctcgatcatttcttagaactgatcattgcgctg-cag-----------------
     |||| |||||  | ||||||||||| |||||||||||||| || ||||| ||||| |||||||| || || || ||||||||||| ||||| || ||     | ||  |||  |  ||  |       ||||          |   |   |  || |   | || |||  | |  |||                 
TTTCAGCTCAGGAGTTTTGGCATTTTGCCTTAACTTCTCCATTTTTTATGTGATTCATTCCACCACTGCTGTAACATTTAATGTTGCTGGAAACCTTAAGgtgagttctatcaggctgaaatgaatcaaatgcttcaagctactatattagttggtctttcgtgttcatgattttgttttcagttggttcattcatgtat

upper sequence: LOC_Os04g59550.2 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 4
---AGGCTCTGGAGTGCTTGCATTTTGCCTAAACTTCTCCATTTTCTACGTGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccatttggc-----------ctatgctttgttcttt-tcatatattctgctcgatcatttcttagaactgatcattgcgctgcag----------
     | ||||| ||  | || || ||||| ||||||||||| ||||| ||||| || ||||| ||||| || || || ||||||||||| || || || ||     || ||               ||      |||||| | | ||| ||| |  |   | | ||  || ||   |||||    || | |          
TTTCAGTTCTGGGGTTTTGGCTTTCTGCCTCAACTTCTCCATCTTCTATGTGATTCACTCAACAACTGCTGTCACATTTAATGTTGCTGGAAATCTTAAGgtgagctcccttaaatagaaaccatctctgaatactgttctctataatacatt-tattgatttaattgctataatgaatcatcatcct-cggccatcctttt

upper sequence: LOC_Os04g59550.2 (Oryza sativa), 5'ss of exon 4
lower sequence: PP1S6_175V6.1 (Physcomitrella patens), 5'ss of exon 5
---AGGCTCTGGAGTGCTTGCATTTTGCCTAAACTTCTCCATTTTCTACGTGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccatttggcctatgctttgttcttttcatatattc-tgctcgat---catttcttagaactgatcattgcgc-tgcag-----------------
   |  ||||||||||   || ||||| || ||||||||||| |||||||| || ||| |||| || || ||||||||||| || || || ||| ||||||||   |||  |||   ||     || |  ||  | ||||   |||  | |    |||| | | |   || || | ||  ||||                  
AACACTCTCTGGAGTGTCCGCTTTTTGTCTCAACTTCTCCATCTTCTACGTCATTCATGCAACAACAGCTGTGACCTTCAACGTGGCAGGAAACATGAAAgtaa-gacctcttgctgta-ataatgctacttcaaaatatggatgcctggtggatatttatcatattagagcactccgtatgcacatgttcgttcaaatggc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66922471|gb|CX109319.1|CX109319
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGT-                         -T-GCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88247068|gb|CI246917.1|CI246917
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88847767|gb|CI018458.1|CI018458
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|33688357|gb|CF316596.1|CF316596
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88833625|gb|CI077106.1|CI077106
EST:     ATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATGGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: ATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|87026811|gb|CI259464.1|CI259464
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86503733|gb|CI146366.1|CI146366
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCCGGAACCCTATCTC
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTT-CCGGAACCCTATCTC
EST: gi|86255766|gb|CI066829.1|CI066829
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88218577|gb|CI218426.1|CI218426
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|29616654|gb|CB621666.1|CB621666
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGT-                         -T-GCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86874424|gb|CI316790.1|CI316790
EST:     ACCTTCAATGTTGCT-GCAACCTG-AA--A                         G-TGCTGTTGCTGTATTGGTGTCAT-GTTGATCTTCC-GAACCCTATCTCT
genomic: ACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|218492784|gb|FG960986.1|FG960986
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGT-                         -T-GCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|218497812|gb|FG965091.1|FG965091
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGT-                         -T-GCTGTTGCTGTATGGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86500550|gb|CI143183.1|CI143183
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|38476272|gb|CF960405.1|CF960405
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGT-                         -T-GCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|87024709|gb|CI259424.1|CI259424
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGT-                         -T-GCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88848848|gb|CI087370.1|CI087370
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATNGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88516692|gb|CI444346.1|CI444346
EST:     TCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88218401|gb|CI218250.1|CI218250
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88996515|gb|CI260019.1|CI260019
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86413586|gb|CI019171.1|CI019171
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|89180075|gb|CI044354.1|CI044354
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86412562|gb|CI066967.1|CI066967
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|58608598|gb|CK036631.1|CK036631
EST:     TCCATGCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86593965|gb|CI260194.1|CI260194
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88975965|gb|CI024216.1|CI024216
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88455420|gb|CI519441.1|CI519441
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGGTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88513990|gb|CI441496.1|CI441496
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88837594|gb|CI078954.1|CI078954
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88834668|gb|CI077951.1|CI077951
EST:     GCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTTT
genomic: GCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86413489|gb|CI067894.1|CI067894
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88983032|gb|CI250636.1|CI250636
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86535753|gb|CI175959.1|CI175959
EST:     TCCATGCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88481468|gb|CI418739.1|CI418739
EST:     TGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88829015|gb|CI073885.1|CI073885
EST:     AATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATGGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: AATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88829067|gb|CI073937.1|CI073937
EST:     CTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: CTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86603288|gb|CI112048.1|CI112048
EST:     ATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: ATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|84117662|gb|CD151429.1|CD151429
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGT-                         -T-GCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86418912|gb|CI053713.1|CI053713
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88992423|gb|CI035561.1|CI035561
EST:     CTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: CTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|87008234|gb|CI299202.1|CI299202
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|33690588|gb|CF318827.1|CF318827
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGACATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88289762|gb|CI525094.1|CI525094
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86428727|gb|CI075408.1|CI075408
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGT-                         G--GCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88835713|gb|CI370818.1|CI370818
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88217499|gb|CI217348.1|CI217348
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88264374|gb|CI368148.1|CI368148
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|89173863|gb|CI041756.1|CI041756
EST:     GCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86522157|gb|CI162363.1|CI162363
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTA                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88992389|gb|CI035527.1|CI035527
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88452271|gb|CI555348.1|CI555348
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88997115|gb|CI389781.1|CI389781
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|218485011|gb|FG955777.1|FG955777
EST:     TCCATTCAACCACTGCAGTGACCTTCAGTGTTGCTGGCAACCTGAAAGT-                         -T-GCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|87015255|gb|CI275445.1|CI275445
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|29660579|gb|CB656854.1|CB656854
EST:     CCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAANA--A                         GT-GCTGTTGCTGTATTGGTGTCATGGTTGATCTT
genomic: CCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAA-AGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTT
EST: gi|29660580|gb|CB656855.1|CB656855
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|88907523|gb|CI090317.1|CI090317
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
EST: gi|86496461|gb|CI139094.1|CI139094
EST:     TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTG-AA--A                         GTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT
genomic: TCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccattt ... tgcgctgcagGTTGCTGTTGCTGTATTGGTGTCATGGTTGATCTTCCGGAACCCTATCTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGCTCTGGAGTGCTTGCATTTTGCCTAAACTTCTCCATTTTCTACGTGATCCATTCAACCACTGCAGTGACCTTCAATGTTGCTGGCAACCTGAAAGTAgcaaccatttggcctatgctttgttcttttcatatattctgctcgatcatttcttagaactgatcattgcgctgcag

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