1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttctatttgtaaaatgattgcttgcatatcattaccacaactctatttcaagaacaatatggactaatttcataattattttttgtgtactta...
species | Oryza sativa |
transcript | LOC_Os04g59040.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|55433781|gb|CV730004.1|CV730004
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|3768324|gb|AU032351.1|AU032351
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGANCGTGTNCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|33794379|gb|CF323075.1|CF323075
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|88423146|gb|CI613447.1|CI613447
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|88732604|gb|CI755781.1|CI755781
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTEST: gi|88300646|gb|CI587450.1|CI587450
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATT
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|88427290|gb|CI586838.1|CI586838
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|88721865|gb|CI743377.1|CI743377
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|33686066|gb|CF314305.1|CF314305
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCATTTGTGTATCCCCATAATTATGGTTTCEST: gi|58602895|gb|CK013423.1|CK013423
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|286879|gb|D15686.1|D15686
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTTCCTATACTCATCAGTTGTGTATEST: gi|66915284|gb|CX102132.1|CX102132
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGT-CCTATACTCATCAGTTGTGTAT
EST: GGGAAGCAAAGTGAAATATGAGCTTGACAACGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|88726501|gb|CI750156.1|CI750156
genomic: GGGAAGCAAAGTGAAATATGAGCTTGACAA-GAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCCATAATTATGGTTTEST: gi|27554006|gb|CA997906.1|CA997906
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCC-ATAATTATGGTTT
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|55433023|gb|CV729535.1|CV729535
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGGCTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|86907275|gb|CI292840.1|CI292840
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|32948454|gb|BP185026.1|BP185026
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|58599062|gb|CK009590.1|CK009590
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|55409712|gb|CV722088.1|CV722088
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|33681023|gb|CF309262.1|CF309262
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|33693190|gb|CF321429.1|CF321429
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|58671895|gb|CK060581.1|CK060581
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|88742766|gb|CI766274.1|CI766274
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTEST: gi|88405920|gb|CI591315.1|CI591315
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTT
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|55434349|gb|CV730296.1|CV730296
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|163925905|gb|EG712281.1|EG712281
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGCGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCEST: gi|86848615|gb|CI293930.1|CI293930
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
EST: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG GTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
genomic: AGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttc ... aatttgacagGTCGACCGTGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAGgtgtgtgttctatttgtaaaatgattgcttgcatatcattaccacaactctatttcaagaacaatatggactaatttcataattattttttgtgtactta
- - - - - - - - - - AAGCAA
- - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - AAGAAA