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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAATTCGATTGTACCATGAAAACTTGACTTCTACAGGATGCAAGTAAAGCCTTCTACTCAACCAATTATTGTTGTTCTTCCACTCTGCCACTCGGATGgttagtgtgtagtattttcagttgggtcaattttctagatggcagttctgtatttgaaaatagtatattgcaagagaaatttatggtcaaattaattttg...

Basic information

species Oryza sativa
transcript LOC_Os04g57210.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66925992|gb|CX112840.1|CX112840
EST:     CTTCTACTCAACCAATTATTGTTGTTCTTCCACTCTGCCANCT-GGATG                         ATACCGAGTCTGCTATGGCTTCAAGAAAGCAATACAGGGACACATTATAC
genomic: CTTCTACTCAACCAATTATTGTTGTTCTTCCACTCTGCCA-CTCGGATGgttagtgtgt ... atttacacagATACTGAGTCTGCTAGGGCTTCAAGAAAGCAATACAGGGACACATTATAC
EST: gi|29618213|gb|CB623225.1|CB623225
EST:     GCCTTCTACTCAACCAATTATTGTTGTTCTTCCACTCTGCCACTCGGATG                         ATACCGAGTCTGCTAGGGCTTCAAGAAAGCAATACAGGGACACATTATACT
genomic: GCCTTCTACTCAACCAATTATTGTTGTTCTTCCACTCTGCCACTCGGATGgttagtgtgt ... atttacacagATACTGAGTCTGCTAGGGCTTCAAGAAAGCAATACAGGGACACATTATACT