1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATTAGATGTTGTTGATGAAAACACGCCCTTGCAAGATGCGTTTCTTCTTGCAGATGATGTTCTTCGTCAAGGTGTCCAAGGAATATCAGATATTATTACAgtaagtattcttcttatctatgctgctgtaacttgtgatcacacaatactcatctgaaaactttgcag
species | Oryza sativa |
transcript | LOC_Os04g56970.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAGATGATGTTCTTCGTCAAGGTGTCCAAGGAATATCACATATTATTACA ATACCTGGACTTGTCAATGTTGATTTTGCTGATGTGAAAGCTGTTATGACAEST: gi|2311708|gb|C27863.1|C27863
genomic: CAGATGATGTTCTTCGTCAAGGTGTCCAAGGAATATCAGATATTATTACAgtaagtattc ... aactttgcagATACCTGGACTTGTCAATGTTGATTTTGCTGATGTGAAAGCTGTTATGAAA
EST: GGAATATCAGATATTATTACA ATACCTGGACTTGTCAATGTTGATTTTGCTGATGTGAAAGCTGTTATGAAAEST: gi|29655649|gb|CB651924.1|CB651924
genomic: GGAATATCAGATATTATTACAgtaagtattc ... aactttgcagATACCTGGACTTGTCAATGTTGATTTTGCTGATGTGAAAGCTGTTATGAAA
EST: CAGATGATGTTCTTCGTCAAGGTGTCCAAGGAATATCAGATATTATTACA ATACCTGGACTTGTCAATGTTGATTTTGCTGATGTGAGAGCTGTTATGAAAEST: gi|29655650|gb|CB651925.1|CB651925
genomic: CAGATGATGTTCTTCGTCAAGGTGTCCAAGGAATATCAGATATTATTACAgtaagtattc ... aactttgcagATACCTGGACTTGTCAATGTTGATTTTGCTGATGTGAAAGCTGTTATGAAA
EST: CAGATGATGTTCTTCGTCAAGGTGTCCAAGGAATATCAGATATTATTACA ATACCTGGACTTGTCAATGTTGATTTTGCTGATGTGAAAGCTGTTATGAAA
genomic: CAGATGATGTTCTTCGTCAAGGTGTCCAAGGAATATCAGATATTATTACAgtaagtattc ... aactttgcagATACCTGGACTTGTCAATGTTGATTTTGCTGATGTGAAAGCTGTTATGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTAGATGTTGTTGATGAAAACACGCCCTTGCAAGATGCGTTTCTTCTTGCAGATGATGTTCTTCGTCAAGGTGTCCAAGGAATATCAGATATTATTACAgtaagtattcttcttatctatgctgctgtaacttgtgatcacacaatactcatctgaaaactttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA