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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCATTTTTGTTCACTGTTGTTGGTTCAACCGGATTCTTAGGCGTTCTTGCAGGCCAGCTTCCTGGGgtatttccttgctacctcctctttgtgctactctggattgataaaaataatccttttttttttccttacaagatataagtgcattaggcttcggtcacaggttcctgcaaaataattttctagtgatattaataaacatcctatgatatatctctatctcag

Basic information

species Oryza sativa
transcript LOC_Os04g54640.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g54640.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G004352_T01 (Zea mays), 5'ss of exon 4
GCAGCATTTTTGTTCACTGTTGTTGGTTCAACCGGATTCTTAGGCGTTCTTGCAGGCCAGCTTCCTGGGgtatttccttgctacctcctctttgtgctactctggattgataaaaataatccttttttttttccttacaagatataagtgcattaggcttcggtcacaggttcctgcaaaataattttctagtgatattaataaacatcctatgatatatctctatctcag
|| ||||| ||||| || ||||| ||| | || |||||||||| ||| |||||||||||||| ||||||||||     |||||  |||        || ||||   |   |  | |  |          |    | |   | ||   |   | | |  |  | || |    ||      || |    |  |  | |  |||| ||  | |||  || ||| |||  |    
GCGGCATTCTTGTTTACAGTTGTGGGTACCACTGGATTCTTAGCCGTCCTTGCAGGCCAGCTCCCTGGGgtat-----tgctatttccatgacac-ctgctctatgtactttcagaggac---------tagaatcatggggtacctgcaaaattgattgtgatcccgacatctaaatgaaaagaaattcaaggtt--taatgaatcttctactat-tatttctgccag--

upper sequence: LOC_Os04g54640.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv07s0031g01560.t01 (Vitis vinifera), 5'ss of exon 4
GCAGCATTTTTGTTCACTGTTGTTGGTTCAACCGGATTCTTAGGCGTTCTTGCAGGCCAGCTTCCTGGGgtatttccttgctacctcctctttgtgctactctggattgataaaaataatccttttttttttccttacaagatataagtgcattaggcttcggtcacaggttcctgcaaaataattttctagtgatattaataaacatcctatgatatatctctatctcag
||||| ||| | || || || || ||  |||| ||||| ||||| |||||||| ||||||||||||||||||  |   |  |  |  |  | | |  || | ||  |   |  | || ||| |||    | |  ||      | ||| |  |  ||||      |||| ||| |                                                         
GCAGCTTTTCTTTTTACGGTAGTGGGGACAACAGGATTTTTAGGTGTTCTTGCTGGCCAGCTTCCTGGGgtaacttaatattctcatccatctat-ttattttgtgtatgtgtatattatcatttaaagtgtatttgacgagtctaact--aggaggccct--ccacatgtttc---------------------------------------------------------