1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTGTTCTTCTAGAATCTCGTGACAGGATAGGTGGTAGAATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTGgtgaggttcctctctgacaatattttctgaattatttgaaatggtggcaaaagtttatctggaaccattatttttaatccacttccattttgtgtgagcatcag
species | Oryza sativa |
transcript | LOC_Os04g53190.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTG GCTTCATGGTGTTTGTGAGGAAAATCCCCTGGCACCAATTATTGGAAGGCTEST: gi|58684084|gb|CK072771.1|CK072771
genomic: ATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTGgtgaggttcc ... tgagcatcagGCTTCATGGTGTTTGTGAGGAAAATCCCCTGGCACCAATTATTGGAAGGCT
EST: ATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTG GCTTCATGGTGTTTGTGAGGAAAATCCCCTGGCACCAATTATTGGAAGGCTEST: gi|58680122|gb|CK068809.1|CK068809
genomic: ATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTGgtgaggttcc ... tgagcatcagGCTTCATGGTGTTTGTGAGGAAAATCCCCTGGCACCAATTATTGGAAGGCT
EST: ATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTG GCTTCATGGTGTTTGTGAGGAAAATCCCCTGGCACCAATTATTGGAAGGCTEST: gi|58663716|gb|CK052402.1|CK052402
genomic: ATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTGgtgaggttcc ... tgagcatcagGCTTCATGGTGTTTGTGAGGAAAATCCCCTGGCACCAATTATTGGAAGGCT
EST: ATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTG GCTTCATGGTGTTTGTGAGGAAAATCCCCTGGCACCAATTATTGGAAGGCTEST: gi|300216051|gb|HO088677.1|HO088677
genomic: ATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTGgtgaggttcc ... tgagcatcagGCTTCATGGTGTTTGTGAGGAAAATCCCCTGGCACCAATTATTGGAAGGCT
EST: ATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTG GCTTCATGGTGTTTGTGAGGAAAATCCCCTGGCACCAATTATTGGAAGGCTEST: gi|33678805|gb|CF307044.1|CF307044
genomic: ATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTGgtgaggttcc ... tgagcatcagGCTTCATGGTGTTTGTGAGGAAAATCCCCTGGCACCAATTATTGGAAGGCT
EST: ATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTG GCTTCATGGTGTTTGTGAGGAAAATCCCCTGGCACCAATTATTGGAAGGCT
genomic: ATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTGgtgaggttcc ... tgagcatcagGCTTCATGGTGTTTGTGAGGAAAATCCCCTGGCACCAATTATTGGAAGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTTCTTCTAGAATCTCGTGACAGGATAGGTGGTAGAATTCACACTGATTACTCTTTTGGCTTTCCTGTTGATCTGGGAGCATCCTGgtgaggttcctctctgacaatattttctgaattatttgaaatggtggcaaaagtttatctggaaccattatttttaatccacttccattttgtgtgagcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA