1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
AAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGCACAACCTGCTAAAGAGGAGTCAAGTGATGATAGCAGTGATGATAGCTCCTCAGATGATgtatgctttttttatctgttttttgcgagtgggttttgtttacttttgttgctaagaagcttatggtttactttttatttttctaatccag
species | Oryza sativa |
transcript | LOC_Os04g52960.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTAAAGAGGAGTCAAGTGATGATAGCAGTGATGATAGCTCCTCAGATGAT GAGCCTGCGAAAAAACCTGTTGCTCGTCCAAATAAGGCTGCACTTTCTACCEST: gi|218494329|gb|FG970076.1|FG970076
genomic: CTAAAGAGGAGTCAAGTGATGATAGCAGTGATGATAGCTCCTCAGATGATgtatgctttt ... tctaatccagGAGCCTGCAAAAAAACCTGTTGCTCGTCCAAATAAGGCTGCACTTTCTACC
EST: CTAAAGAGGAGTCAAGTGATGATAGCAGTGATGATAGCTCCTCAGATGAT GAGCCTGCGAAAAAACCTGTTGCTCGTCCAAATAAGGCTGCACTTTCTACCEST: gi|29633107|gb|CB638116.1|CB638116
genomic: CTAAAGAGGAGTCAAGTGATGATAGCAGTGATGATAGCTCCTCAGATGATgtatgctttt ... tctaatccagGAGCCTGCAAAAAAACCTGTTGCTCGTCCAAATAAGGCTGCACTTTCTACC
EST: CTAAAGAGGAGTCAAGTGATGATAGCAGTGATGATAGCTCCTCAGATGAT GAGCCTGCNNNNNNNCCTGTTGCTCGTCCAAATAAGGCTGCACTTTCTACCEST: gi|58683130|gb|CK071817.1|CK071817
genomic: CTAAAGAGGAGTCAAGTGATGATAGCAGTGATGATAGCTCCTCAGATGATgtatgctttt ... tctaatccagGAGCCTGCAAAAAAACCTGTTGCTCGTCCAAATAAGGCTGCACTTTCTACC
EST: CTAAAGAGGAGTCAAGTGATGATAGCAGTGATGATAGCTCCTCAGATGAT GAGCCTGCGAAAAAACCTGTTGCTCGTCCAAATAAGGCTGCACTTTCTACCEST: gi|58662979|gb|CK051665.1|CK051665
genomic: CTAAAGAGGAGTCAAGTGATGATAGCAGTGATGATAGCTCCTCAGATGATgtatgctttt ... tctaatccagGAGCCTGCAAAAAAACCTGTTGCTCGTCCAAATAAGGCTGCACTTTCTACC
EST: CTAAAGAGGAGTCAAGTGATGATAGCAGTGATGATAGCTCCTCAGATGAT GAGCCTGCGAAAAAACCTGTTGCTCGTCCAAATAAGGCTGCACTTTCTACC
genomic: CTAAAGAGGAGTCAAGTGATGATAGCAGTGATGATAGCTCCTCAGATGATgtatgctttt ... tctaatccagGAGCCTGCAAAAAAACCTGTTGCTCGTCCAAATAAGGCTGCACTTTCTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGCCCAACCAAAGAAGACTGTCCAACCGAAGAAGGCTGCACAACCTGCTAAAGAGGAGTCAAGTGATGATAGCAGTGATGATAGCTCCTCAGATGATgtatgctttttttatctgttttttgcgagtgggttttgtttacttttgttgctaagaagcttatggtttactttttatttttctaatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG