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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTACTTGAAGCACTTGGAGATCGAAAAGGAATTAATCGGTTTGGGCATTTTACAGCACCACTTGATGAGGCAGCGGTTGAGGTTATACTGgtacatgctatcatcctggcattgcgtttacatactgcaaatgtatatacttccctgcatttctacgtttgtattcatgtggccataattctcttatgcc...

Basic information

species Oryza sativa
transcript LOC_Os04g52710.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g52710.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G094255_T02 (Zea mays), 5'ss of exon 4
GCACTACTTGAAGCACTTGGAGATCGAAAAGGAATTAATCGGTTTGGGCATTTTACAGCACCACTTGATGAGGCAGCGGTTGAGGTTATACTGgtacatgctatcatcctggcattgcgtttacatactgcaaatgtatatacttccctgcatttc-tacgtttgt-attcatgtggccataattctcttatgcc-
|||||||||||||||||||| |||||||| |||||||| || ||||| |||||||||||||| |||||||||||||||||||||||||||||||||  |   ||  || |     ||  |||| |||||  ||||||  |   || | |  | ||  |  |  ||| ||  |||    | |||  |||   |||  
GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTGgtaagtcacattctcttt---ctgtatttaaatactataaatgtgcaattttgcattgacttgatgtgcctgtcatatatgcattcgtaaacctcaagtgctg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29658246|gb|CB654521.1|CB654521
EST:     TTGGGCATTTTACAGCACCACTTGATGAGGCAGCGGTTGAGGTTATACTG                         GATCTATCTGGTCGTCCTCATTTGAGTTGCGGCTTAAGTATTCCGACTGAG
genomic: TTGGGCATTTTACAGCACCACTTGATGAGGCAGCGGTTGAGGTTATACTGgtacatgcta ... ccatatctagGATCTATCTGGTCGTCCTCATTTGAGTTGCGGCTTAAGTATTCCGACTGAG
EST: gi|29676398|gb|CB672673.1|CB672673
EST:     TTGGGCATTTTACAGCACCACTTGATGAGGCAGCGGTTGAGGTTATACTG                         GATCTATCTGGTCGTCCTCATTTGAGTTGCGGCTTAAGTATTCCGACTGAG
genomic: TTGGGCATTTTACAGCACCACTTGATGAGGCAGCGGTTGAGGTTATACTGgtacatgcta ... ccatatctagGATCTATCTGGTCGTCCTCATTTGAGTTGCGGCTTAAGTATTCCGACTGAG